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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:196.6 nTPM
HPA:196.6 nTPM
GTEx:181.9 nTPM
FANTOM5:161.9 Scaled Tags Per Million
Pig:230.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 196.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 187.3
2565 Male, age 75, midline 209.2
2194 Female, age 79, both hemispheres 193.9
1981 Female, age 72, midline 183.6
2816 Male, age 47, midline 182.1
2048 Male, age 55, midline 167.7
Cervical spinal cord, dorsal horn
nTPM: 192.1
2297 Male, age 75, both hemispheres 201.7
2069 Male, age 47, both hemispheres 197.4
2296 Male, age 66, both hemispheres 191.0
2721 Male, age 90, both hemispheres 190.6
1877 Male, age 55, unknown 187.6
2173 Female, age 72, unknown 184.3
Cervical spinal cord, ventral horn
nTPM: 196.6
2480 Male, age 75, both hemispheres 213.6
2809 Male, age 90, both hemispheres 202.4
2295 Male, age 66, both hemispheres 195.3
2820 Female, age 79, both hemispheres 195.2
2068 Male, age 55, unknown 188.7
2098 Female, age 72, unknown 184.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 181.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 181.9
Samples: 159

Max nTPM: 287.8
Min nTPM: 124.5
Std nTPM: 29.1
Median nTPM: 178.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 287.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 282.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 278.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 270.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 252.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 245.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 242.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 238.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 234.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 232.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 228.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 226.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 225.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 225.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 224.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 224.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 223.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 217.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 215.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 214.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 210.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 210.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 210.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 209.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 208.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 207.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 205.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 205.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 203.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 203.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 202.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 200.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 199.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 199.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 198.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 197.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 194.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 194.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 194.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 194.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 193.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 193.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 192.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 192.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 192.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 192.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 190.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 190.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 190.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 190.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 189.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 189.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 189.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 189.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 188.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 188.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 187.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 187.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 187.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 185.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 185.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 184.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 184.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 184.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 183.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 183.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 183.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 183.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 182.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 182.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 181.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 180.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 180.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 180.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 180.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 180.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 179.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 179.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 179.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 178.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 178.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 177.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 177.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 176.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 176.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 176.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 176.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 176.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 176.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 174.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 174.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 172.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 171.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 171.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 170.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 170.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 169.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 169.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 169.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 169.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 168.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 168.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 167.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 167.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 166.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 165.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 165.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 165.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 164.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 164.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 164.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 162.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 162.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 162.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 162.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 162.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 161.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 160.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 160.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 160.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 160.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 160.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 159.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 159.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 159.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 159.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 159.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 159.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 159.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 158.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 158.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 158.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 157.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 156.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 155.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 154.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 154.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 153.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 153.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 153.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 153.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 152.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 152.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 152.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 151.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 150.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 149.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 149.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 149.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 145.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 143.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 143.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 141.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 139.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 138.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 136.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 135.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 131.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 124.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 161.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 161.9
FF:10159-103A6 76 years, female 180.1
FF:10181-103D1 60 years, female 143.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 230.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 217.9
Samples: 4

Max nTPM: 233.5
Min nTPM: 210.1
Sample A Female 213.7
Sample B Female 210.1
Sample C Male 233.5
Sample D Male 214.1
Ventral spinal cord
nTPM: 230.7
Samples: 4

Max nTPM: 244.5
Min nTPM: 214.6
Sample A Female 214.6
Sample B Female 234.1
Sample C Male 229.7
Sample D Male 244.5

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