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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:240.8 nTPM
HPA:240.8 nTPM
GTEx:234.8 nTPM
FANTOM5:528.1 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody CAB007742
Glandular cells High


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 240.8
overview
Male, age 65
Small intestine sample 232
nTPM: 222.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 260.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 238.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 241.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 234.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 234.8
Samples: 187

Max nTPM: 385.3
Min nTPM: 131.1
Std nTPM: 54.4
Median nTPM: 228.1
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 385.3
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 383.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 368.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 363.1
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 359.2
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 348.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 347.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 343.8
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 342.0
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 332.7
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 332.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 329.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 328.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 327.1
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 322.0
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 320.4
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 319.1
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 314.4
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 314.0
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 308.6
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 308.3
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 306.1
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 300.7
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 297.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 296.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 295.6
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 294.2
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 294.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 293.3
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 292.5
GTEX-14PN3-2026-SM-68729 60-69 years, female 292.1
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 291.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 290.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 288.9
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 288.0
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 286.7
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 281.6
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 280.9
GTEX-144GM-1026-SM-79OKU 20-29 years, male 280.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 277.7
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 275.6
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 273.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 273.4
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 272.4
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 272.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 271.9
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 271.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 270.8
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 269.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 268.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 267.5
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 266.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 265.2
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 263.9
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 263.4
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 257.5
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 257.2
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 255.9
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 255.4
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 255.1
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 253.1
GTEX-14PK6-1626-SM-6871I 70-79 years, female 252.7
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 252.6
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 251.6
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 251.3
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 251.2
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 251.1
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 251.0
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 250.7
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 250.4
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 250.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 249.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 249.2
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 248.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 248.3
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 247.6
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 246.0
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 245.8
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 245.1
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 244.4
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 244.3
GTEX-117YX-0326-SM-5GICL 50-59 years, male 243.9
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 242.2
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 241.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 240.7
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 239.7
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 233.9
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 233.7
GTEX-1C475-1426-SM-793CH 40-49 years, female 232.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 232.2
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 230.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 230.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 230.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 228.1
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 227.2
GTEX-13113-1226-SM-5EGHT 60-69 years, female 227.1
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 226.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 225.7
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 224.6
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 224.6
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 224.4
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 220.3
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 219.8
GTEX-13111-1426-SM-5DUW3 50-59 years, male 218.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 218.7
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 217.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 214.9
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 214.6
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 214.0
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 213.7
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 213.1
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 210.6
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 209.8
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 209.0
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 207.6
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 206.8
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 206.0
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 205.8
GTEX-1192X-2526-SM-59868 50-59 years, male 205.2
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 204.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 202.3
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 202.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 202.1
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 201.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 201.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 201.3
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 200.7
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 199.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 199.1
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 198.9
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 196.7
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 195.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 195.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 195.2
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 193.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 193.5
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 192.1
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 192.0
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 191.8
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 191.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 190.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 190.2
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 189.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 188.4
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 188.3
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 188.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 187.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 186.9
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 186.6
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 184.5
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 184.4
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 184.0
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 183.3
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 182.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 182.7
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 182.5
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 182.2
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 180.9
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 180.3
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 180.1
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 179.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 177.7
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 177.5
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 176.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 175.6
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 174.4
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 174.2
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 172.1
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 171.2
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 170.8
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 167.7
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 166.8
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 166.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 166.3
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 164.6
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 160.3
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 158.4
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 158.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 156.8
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 155.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 154.3
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 152.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 151.0
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 145.6
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 144.8
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 144.5
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 131.1
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 528.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 528.1
FF:10024-101D6 15,40,85 years, mixed 528.1

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