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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:291.7 nTPM
HPA:291.7 nTPM
GTEx:753.5 nTPM
FANTOM5:340.4 Scaled Tags Per Million
Pig:66.8 nTPM
Mouse:201.3 nTPM
Allen mouse:10.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 291.7
Sample id Sample description nTPM
Amygdala
nTPM: 276.0
2517 Female, age 94, left hemisphere 291.2
2514 Male, age 75, right hemisphere 282.1
2695 Female, age 67, right hemisphere 277.4
2814 Male, age 76, right hemisphere 265.2
1987 Female, age 91, left hemisphere 264.2
Basal amygdala
nTPM: 291.7
2827 Female, age 67, right hemisphere 315.9
2243 Female, age 91, right hemisphere 300.3
2609 Male, age 75, right hemisphere 299.8
2110 Male, age 80, left hemisphere 288.3
2685 Female, age 94, left hemisphere 288.3
1955 Male, age 76, both hemispheres 257.6
Central amygdala
nTPM: 275.9
2826 Female, age 94, left hemisphere 319.2
2515 Male, age 75, right hemisphere 279.1
2239 Male, age 80, left hemisphere 273.9
1905 Male, age 76, both hemispheres 257.3
2701 Female, age 91, right hemisphere 249.9
Corticomedial amygdala
nTPM: 289.1
2535 Female, age 67, right hemisphere 310.8
2429 Female, age 94, left hemisphere 300.7
2829 Male, age 80, left hemisphere 293.6
2428 Male, age 75, right hemisphere 292.0
2242 Female, age 91, right hemisphere 286.9
2240 Male, age 76, both hemispheres 250.4
Lateral amygdala
nTPM: 290.3
2830 Female, age 67, right hemisphere 327.2
2534 Female, age 94, left hemisphere 318.8
2516 Male, age 75, right hemisphere 300.4
2255 Female, age 91, right hemisphere 271.2
2256 Male, age 80, left hemisphere 264.5
1883 Male, age 76, both hemispheres 260.0
Stria terminalis, bed nucleus
nTPM: 262.0
1974 Female, age 91, both hemispheres 279.8
2486 Female, age 94, both hemispheres 265.2
2201 Male, age 74, unknown 240.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 753.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 753.5
Samples: 152

Max nTPM: 3173.0
Min nTPM: 233.2
Std nTPM: 342.0
Median nTPM: 681.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 3173.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1794.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1694.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1654.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1601.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1495.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1370.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1247.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1242.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1190.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1180.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1163.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1113.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1106.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1078.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1070.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1061.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1058.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1036.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1031.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1023.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1002.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1000.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 985.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 981.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 977.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 972.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 969.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 959.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 941.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 922.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 921.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 917.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 917.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 906.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 905.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 903.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 901.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 897.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 895.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 887.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 885.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 879.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 877.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 873.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 871.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 853.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 840.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 835.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 834.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 830.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 828.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 826.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 822.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 820.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 804.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 789.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 784.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 777.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 776.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 775.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 774.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 767.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 758.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 749.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 742.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 738.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 736.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 723.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 718.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 716.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 715.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 708.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 689.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 686.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 684.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 679.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 671.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 670.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 665.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 661.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 661.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 658.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 657.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 657.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 645.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 644.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 642.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 642.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 637.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 622.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 622.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 604.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 604.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 602.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 597.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 590.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 581.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 575.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 574.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 573.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 570.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 567.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 567.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 565.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 560.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 557.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 554.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 553.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 552.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 549.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 548.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 536.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 535.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 528.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 528.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 518.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 516.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 513.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 512.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 512.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 511.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 503.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 502.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 493.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 489.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 486.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 485.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 480.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 478.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 467.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 466.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 464.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 460.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 457.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 453.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 451.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 449.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 446.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 432.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 427.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 426.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 401.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 391.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 374.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 361.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 360.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 346.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 329.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 327.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 325.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 233.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 340.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 340.4
FF:10151-102I7 76 years, female 340.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 66.8
Pig sample Sample description nTPM
Amygdala
nTPM: 66.8
Samples: 4

Max nTPM: 94.4
Min nTPM: 51.4
Sample A Female 94.4
Sample B Female 59.6
Sample C Male 61.9
Sample D Male 51.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 201.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 201.3
Samples: 4

Max nTPM: 215.8
Min nTPM: 175.2
Sample A Male 175.2
Sample B Male 213.6
Sample C Female 215.8
Sample D Female 200.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 10.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 10.2
68443298 Antisense, RP_050111_01_G03, Mouse strain C57BL/6J (56 days, male) 15.1
2280 Antisense, RP_Baylor_102835, Mouse strain C57BL/6J (56 days, male) 5.3
2279 Antisense, RP_Baylor_102835, Mouse strain C57BL/6J (56 days, male) 1.3

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