MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:263.0 nTPM
HPA:263.0 nTPM
GTEx:422.5 nTPM
FANTOM5:211.0 Scaled Tags Per Million
Pig:105.3 nTPM
Mouse:140.5 nTPM
Allen mouse:6.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 263.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 253.1
2586 Male, age 75, left hemisphere 282.9
2019 Male, age 18, unknown 256.1
2828 Female, age 72, unknown 255.7
2666 Male, age 74, left hemisphere 251.4
2219 Male, age 76, both hemispheres 250.6
2411 Female, age 72, unknown 250.1
1870 Female, age 42, unknown 249.1
1827 Male, age 72, unknown 248.1
1830 Male, age 51, unknown 244.3
1833 Male, age 53, unknown 243.0
Dorsal raphe nucleus
nTPM: 249.1
2750 Male, age 76, both hemispheres 253.3
2047 Male, age 72, unknown 253.1
2298 Female, age 72, unknown 248.6
1828 Male, age 53, unknown 247.8
2016 Female, age 72, unknown 242.7
Inferior colliculus
nTPM: 247.1
2097 Female, age 72, unknown 251.0
1848 Female, age 42, unknown 248.2
1890 Male, age 53, unknown 247.1
2849 Male, age 72, unknown 242.0
Median raphe nucleus
nTPM: 251.7
2220 Male, age 76, midline 251.7
Pedunculopontine tegmental nucleus
nTPM: 249.8
2334 Male, age 80, both hemispheres 259.6
2338 Male, age 61, both hemispheres 246.1
1921 Female, age 85, both hemispheres 243.8
Periaquaductal grey, anterior
nTPM: 263.0
2502 Female, age 75, unknown 269.1
1795 Male, age 51, unknown 264.3
1947 Male, age 18, unknown 255.6
Periaquaductal grey, dorsal
nTPM: 238.3
1840 Male, age 53, unknown 246.2
1831 Male, age 72, unknown 240.0
2464 Female, age 72, unknown 236.4
2850 Male, age 76, both hemispheres 230.5
Periaquaductal grey, lateral
nTPM: 234.0
2053 Male, age 18, unknown 238.3
2272 Male, age 74, both hemispheres 233.0
2140 Male, age 76, both hemispheres 230.7
Pretectal area
nTPM: 251.2
2007 Male, age 72, unknown 274.8
1817 Female, age 42, unknown 271.5
1816 Male, age 51, unknown 260.7
1944 Female, age 72, unknown 259.8
1815 Male, age 53, unknown 252.6
2407 Male, age 75, both hemispheres 246.3
2667 Female, age 75, unknown 244.1
2825 Male, age 18, unknown 243.0
2316 Male, age 76, right hemisphere 239.4
2224 Female, age 72, unknown 239.2
2273 Male, age 74, both hemispheres 232.3
Red nucleus
nTPM: 257.5
2785 Male, age 18, unknown 267.1
2503 Female, age 72, unknown 266.0
2588 Male, age 74, left hemisphere 265.1
2584 Male, age 75, left hemisphere 262.3
2227 Male, age 72, unknown 260.4
2769 Male, age 72, unknown 259.6
2725 Female, age 75, unknown 259.4
1821 Female, age 72, unknown 255.6
1904 Male, age 53, unknown 253.0
1865 Male, age 51, unknown 252.2
1954 Female, age 42, unknown 247.6
2823 Male, age 76, right hemisphere 241.9
Substantia nigra
nTPM: 260.4
1851 Male, age 51, unknown 274.2
2665 Male, age 74, both hemispheres 271.4
2583 Male, age 75, right hemisphere 266.3
1916 Female, age 42, unknown 264.0
1889 Female, age 72, unknown 263.0
1941 Male, age 53, unknown 259.9
2409 Female, age 72, unknown 256.9
2699 Male, age 18, unknown 255.1
2590 Female, age 75, unknown 252.2
2241 Male, age 72, unknown 240.9
Superior colliculus
nTPM: 251.4
1796 Male, age 53, unknown 266.5
2087 Female, age 72, unknown 258.1
2668 Female, age 75, unknown 257.4
2664 Male, age 75, both hemispheres 252.1
2261 Male, age 18, unknown 251.5
1913 Female, age 42, unknown 249.1
2587 Male, age 74, left hemisphere 248.4
1995 Male, age 72, unknown 247.3
1839 Male, age 51, unknown 244.3
1895 Male, age 76, right hemisphere 238.9
Ventral tegmental area
nTPM: 260.7
2223 Female, age 72, unknown 274.6
1915 Female, age 42, unknown 269.4
2410 Female, age 72, unknown 258.9
1942 Male, age 51, unknown 257.1
2218 Male, age 76, both hemispheres 255.7
2021 Male, age 53, unknown 248.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 422.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 422.5
Samples: 139

Max nTPM: 995.7
Min nTPM: 176.3
Std nTPM: 138.2
Median nTPM: 392.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 995.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 945.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 944.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 819.4
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 801.8
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 678.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 662.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 632.5
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 624.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 623.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 614.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 211.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 211.0
FF:10158-103A5 76 years, female 211.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 105.3
Pig sample Sample description nTPM
Midbrain
nTPM: 86.2
Samples: 4

Max nTPM: 103.5
Min nTPM: 71.3
Sample A Female 83.8
Sample B Female 71.3
Sample C Male 103.5
Sample D Male 86.1
Periaqueductal gray
nTPM: 59.5
Samples: 3

Max nTPM: 70.5
Min nTPM: 52.8
Sample B Female 55.2
Sample C Male 70.5
Sample D Male 52.8
Substantia nigra
nTPM: 74.3
Samples: 4

Max nTPM: 90.7
Min nTPM: 54.6
Sample A Female 90.7
Sample B Female 54.6
Sample C Male 87.4
Sample D Male 64.6
Superior colliculi
nTPM: 105.4
Samples: 4

Max nTPM: 117.8
Min nTPM: 90.4
Sample A Female 117.8
Sample B Female 90.4
Sample C Male 116.8
Sample D Male 96.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 140.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 140.5
Samples: 4

Max nTPM: 157.5
Min nTPM: 121.3
Sample A Male 157.5
Sample B Male 135.0
Sample C Female 121.3
Sample D Female 148.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.5
68443298 Antisense, RP_050111_01_G03, Mouse strain C57BL/6J (56 days, male) 7.6
2280 Antisense, RP_Baylor_102835, Mouse strain C57BL/6J (56 days, male) 5.3
2279 Antisense, RP_Baylor_102835, Mouse strain C57BL/6J (56 days, male) 1.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.