MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:81.1 nTPM
HPA:81.1 nTPM
GTEx:102.7 nTPM
FANTOM5:207.7 Scaled Tags Per Million
Pig:146.3 nTPM
Mouse:165.1 nTPM
Allen mouse:10.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 81.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 73.2
1870 Female, age 42, unknown 79.8
2828 Female, age 72, unknown 76.7
1833 Male, age 53, unknown 76.5
2666 Male, age 74, left hemisphere 75.8
1830 Male, age 51, unknown 75.4
2411 Female, age 72, unknown 73.3
2586 Male, age 75, left hemisphere 72.1
2019 Male, age 18, unknown 69.0
1827 Male, age 72, unknown 67.9
2219 Male, age 76, both hemispheres 65.1
Dorsal raphe nucleus
nTPM: 66.0
2750 Male, age 76, both hemispheres 82.6
1828 Male, age 53, unknown 66.9
2047 Male, age 72, unknown 63.1
2298 Female, age 72, unknown 58.9
2016 Female, age 72, unknown 58.4
Inferior colliculus
nTPM: 56.7
1848 Female, age 42, unknown 58.8
2849 Male, age 72, unknown 58.5
1890 Male, age 53, unknown 56.8
2097 Female, age 72, unknown 52.5
Median raphe nucleus
nTPM: 74.3
2220 Male, age 76, midline 74.3
Pedunculopontine tegmental nucleus
nTPM: 68.5
2334 Male, age 80, both hemispheres 77.1
2338 Male, age 61, both hemispheres 64.8
1921 Female, age 85, both hemispheres 63.6
Periaquaductal grey, anterior
nTPM: 65.4
1947 Male, age 18, unknown 68.5
1795 Male, age 51, unknown 64.0
2502 Female, age 75, unknown 63.8
Periaquaductal grey, dorsal
nTPM: 54.7
2850 Male, age 76, both hemispheres 57.7
1831 Male, age 72, unknown 56.3
2464 Female, age 72, unknown 55.6
1840 Male, age 53, unknown 49.2
Periaquaductal grey, lateral
nTPM: 57.6
2272 Male, age 74, both hemispheres 60.5
2053 Male, age 18, unknown 58.2
2140 Male, age 76, both hemispheres 54.2
Pretectal area
nTPM: 62.9
2407 Male, age 75, both hemispheres 70.4
1815 Male, age 53, unknown 69.3
2667 Female, age 75, unknown 68.7
2825 Male, age 18, unknown 65.7
1817 Female, age 42, unknown 63.8
2007 Male, age 72, unknown 61.6
2316 Male, age 76, right hemisphere 61.5
1944 Female, age 72, unknown 59.2
1816 Male, age 51, unknown 59.0
2273 Male, age 74, both hemispheres 58.4
2224 Female, age 72, unknown 53.9
Red nucleus
nTPM: 81.1
1865 Male, age 51, unknown 88.7
1904 Male, age 53, unknown 87.7
1821 Female, age 72, unknown 87.4
2823 Male, age 76, right hemisphere 83.3
2769 Male, age 72, unknown 83.1
2227 Male, age 72, unknown 82.2
1954 Female, age 42, unknown 80.2
2588 Male, age 74, left hemisphere 79.7
2584 Male, age 75, left hemisphere 79.0
2503 Female, age 72, unknown 75.9
2785 Male, age 18, unknown 74.0
2725 Female, age 75, unknown 71.9
Substantia nigra
nTPM: 73.5
1916 Female, age 42, unknown 87.2
1851 Male, age 51, unknown 78.7
2583 Male, age 75, right hemisphere 77.2
2699 Male, age 18, unknown 77.1
1941 Male, age 53, unknown 74.5
2241 Male, age 72, unknown 71.5
2590 Female, age 75, unknown 68.7
2409 Female, age 72, unknown 66.6
1889 Female, age 72, unknown 66.5
2665 Male, age 74, both hemispheres 66.5
Superior colliculus
nTPM: 66.6
2668 Female, age 75, unknown 74.0
1913 Female, age 42, unknown 73.5
2587 Male, age 74, left hemisphere 69.6
1995 Male, age 72, unknown 68.9
1895 Male, age 76, right hemisphere 65.9
2261 Male, age 18, unknown 65.1
1796 Male, age 53, unknown 65.0
1839 Male, age 51, unknown 63.9
2664 Male, age 75, both hemispheres 62.9
2087 Female, age 72, unknown 57.9
Ventral tegmental area
nTPM: 72.8
2223 Female, age 72, unknown 82.4
2218 Male, age 76, both hemispheres 75.7
1915 Female, age 42, unknown 74.8
2410 Female, age 72, unknown 72.7
1942 Male, age 51, unknown 67.8
2021 Male, age 53, unknown 63.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 102.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 102.7
Samples: 139

Max nTPM: 213.6
Min nTPM: 53.8
Std nTPM: 26.8
Median nTPM: 100.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 213.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 203.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 180.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 169.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 161.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 159.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 147.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 146.6
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 142.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 140.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 139.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 207.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 207.7
FF:10158-103A5 76 years, female 207.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 146.3
Pig sample Sample description nTPM
Midbrain
nTPM: 146.3
Samples: 4

Max nTPM: 216.5
Min nTPM: 113.3
Sample A Female 216.5
Sample B Female 115.1
Sample C Male 140.4
Sample D Male 113.3
Periaqueductal gray
nTPM: 95.8
Samples: 3

Max nTPM: 105.3
Min nTPM: 88.2
Sample B Female 94.0
Sample C Male 105.3
Sample D Male 88.2
Substantia nigra
nTPM: 143.0
Samples: 4

Max nTPM: 177.2
Min nTPM: 94.3
Sample A Female 177.2
Sample B Female 94.3
Sample C Male 160.0
Sample D Male 140.3
Superior colliculi
nTPM: 126.8
Samples: 4

Max nTPM: 150.0
Min nTPM: 72.1
Sample A Female 150.0
Sample B Female 72.1
Sample C Male 147.2
Sample D Male 137.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 165.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 165.1
Samples: 4

Max nTPM: 168.6
Min nTPM: 160.7
Sample A Male 168.6
Sample B Male 160.7
Sample C Female 165.2
Sample D Female 165.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.3
71495807 Antisense, RP_050913_03_F04, Mouse strain C57BL/6J (56 days, male) 10.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.