MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:55.4 nTPM
HPA:55.4 nTPM
GTEx:45.5 nTPM
FANTOM5:65.6 Scaled Tags Per Million
Pig:39.2 nTPM
Mouse:86.3 nTPM
Allen mouse:10.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 55.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.2
2019 Male, age 18, unknown 55.5
1870 Female, age 42, unknown 55.3
1827 Male, age 72, unknown 52.8
2828 Female, age 72, unknown 51.9
1833 Male, age 53, unknown 51.2
1830 Male, age 51, unknown 50.9
2411 Female, age 72, unknown 50.7
2219 Male, age 76, both hemispheres 49.4
2666 Male, age 74, left hemisphere 47.8
2586 Male, age 75, left hemisphere 46.8
Dorsal raphe nucleus
nTPM: 53.7
2298 Female, age 72, unknown 57.7
2016 Female, age 72, unknown 54.1
1828 Male, age 53, unknown 53.5
2750 Male, age 76, both hemispheres 52.2
2047 Male, age 72, unknown 51.3
Inferior colliculus
nTPM: 53.5
2097 Female, age 72, unknown 56.6
1890 Male, age 53, unknown 53.4
1848 Female, age 42, unknown 52.5
2849 Male, age 72, unknown 51.5
Median raphe nucleus
nTPM: 54.2
2220 Male, age 76, midline 54.2
Pedunculopontine tegmental nucleus
nTPM: 55.4
2338 Male, age 61, both hemispheres 58.9
2334 Male, age 80, both hemispheres 56.5
1921 Female, age 85, both hemispheres 50.8
Periaquaductal grey, anterior
nTPM: 52.4
2502 Female, age 75, unknown 52.8
1947 Male, age 18, unknown 52.7
1795 Male, age 51, unknown 51.6
Periaquaductal grey, dorsal
nTPM: 54.3
2850 Male, age 76, both hemispheres 59.8
1840 Male, age 53, unknown 54.6
1831 Male, age 72, unknown 51.9
2464 Female, age 72, unknown 50.9
Periaquaductal grey, lateral
nTPM: 55.3
2140 Male, age 76, both hemispheres 57.3
2272 Male, age 74, both hemispheres 55.4
2053 Male, age 18, unknown 53.1
Pretectal area
nTPM: 55.0
2273 Male, age 74, both hemispheres 60.0
2007 Male, age 72, unknown 57.4
1817 Female, age 42, unknown 57.1
1815 Male, age 53, unknown 55.8
1816 Male, age 51, unknown 55.8
2224 Female, age 72, unknown 55.4
2667 Female, age 75, unknown 55.2
1944 Female, age 72, unknown 55.0
2316 Male, age 76, right hemisphere 52.5
2825 Male, age 18, unknown 51.3
2407 Male, age 75, both hemispheres 49.2
Red nucleus
nTPM: 53.1
1821 Female, age 72, unknown 56.9
2725 Female, age 75, unknown 55.4
1954 Female, age 42, unknown 55.0
2503 Female, age 72, unknown 54.7
1904 Male, age 53, unknown 54.6
2785 Male, age 18, unknown 54.2
1865 Male, age 51, unknown 53.7
2227 Male, age 72, unknown 52.3
2769 Male, age 72, unknown 52.0
2823 Male, age 76, right hemisphere 50.5
2588 Male, age 74, left hemisphere 49.7
2584 Male, age 75, left hemisphere 48.3
Substantia nigra
nTPM: 52.1
1889 Female, age 72, unknown 54.7
1916 Female, age 42, unknown 53.8
2241 Male, age 72, unknown 53.5
1851 Male, age 51, unknown 53.2
2590 Female, age 75, unknown 52.5
2665 Male, age 74, both hemispheres 52.2
2409 Female, age 72, unknown 51.7
1941 Male, age 53, unknown 50.3
2699 Male, age 18, unknown 49.9
2583 Male, age 75, right hemisphere 49.4
Superior colliculus
nTPM: 52.4
2587 Male, age 74, left hemisphere 55.3
2087 Female, age 72, unknown 55.1
1995 Male, age 72, unknown 54.8
2261 Male, age 18, unknown 54.3
1913 Female, age 42, unknown 54.0
1796 Male, age 53, unknown 52.1
1895 Male, age 76, right hemisphere 51.9
1839 Male, age 51, unknown 51.8
2668 Female, age 75, unknown 49.0
2664 Male, age 75, both hemispheres 46.0
Ventral tegmental area
nTPM: 51.7
1915 Female, age 42, unknown 53.3
2410 Female, age 72, unknown 52.9
2223 Female, age 72, unknown 52.1
2021 Male, age 53, unknown 50.9
2218 Male, age 76, both hemispheres 50.7
1942 Male, age 51, unknown 50.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 45.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.5
Samples: 139

Max nTPM: 129.4
Min nTPM: 21.6
Std nTPM: 19.0
Median nTPM: 40.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 129.4
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 114.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 112.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 105.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 102.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 99.5
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 98.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 94.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 85.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 85.3
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 69.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 65.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 65.6
FF:10158-103A5 76 years, female 65.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 39.2
Pig sample Sample description nTPM
Midbrain
nTPM: 38.4
Samples: 4

Max nTPM: 58.3
Min nTPM: 28.6
Sample A Female 58.3
Sample B Female 33.9
Sample C Male 32.7
Sample D Male 28.6
Periaqueductal gray
nTPM: 31.5
Samples: 3

Max nTPM: 33.8
Min nTPM: 30.2
Sample B Female 33.8
Sample C Male 30.6
Sample D Male 30.2
Substantia nigra
nTPM: 35.4
Samples: 4

Max nTPM: 41.2
Min nTPM: 31.8
Sample A Female 41.2
Sample B Female 34.3
Sample C Male 31.8
Sample D Male 34.4
Superior colliculi
nTPM: 39.3
Samples: 4

Max nTPM: 45.4
Min nTPM: 33.9
Sample A Female 43.3
Sample B Female 45.4
Sample C Male 33.9
Sample D Male 34.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 86.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 86.3
Samples: 4

Max nTPM: 96.9
Min nTPM: 77.2
Sample A Male 77.2
Sample B Male 79.6
Sample C Female 91.4
Sample D Female 96.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.0
69079989 Antisense, RP_050324_01_B04, Mouse strain C57BL/6J (56 days, male) 10.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.