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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:621.2 nTPM
HPA:621.2 nTPM
GTEx:492.1 nTPM
FANTOM5:768.9 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA044999Antibody CAB007790
Glandular cells HighHigh




SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 621.2
overview
Male, age 65
Small intestine sample 232
nTPM: 514.8
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 660.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 616.3
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 692.7

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 492.1
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 492.1
Samples: 187

Max nTPM: 852.8
Min nTPM: 227.1
Std nTPM: 143.1
Median nTPM: 480.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 852.8
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 809.1
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 803.9
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 791.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 772.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 771.8
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 769.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 769.2
GTEX-YFCO-1326-SM-664NV 40-49 years, male 767.9
GTEX-111YS-1426-SM-5GID8 60-69 years, male 750.4
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 750.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 749.4
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 740.4
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 719.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 714.7
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 711.1
GTEX-1122O-1326-SM-5H11F 60-69 years, female 709.7
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 699.8
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 699.7
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 696.9
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 695.5
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 673.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 671.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 670.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 669.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 669.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 667.7
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 659.2
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 659.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 650.6
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 646.7
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 641.2
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 640.3
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 633.5
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 627.6
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 618.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 616.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 615.9
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 610.5
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 609.5
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 607.7
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 603.5
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 602.8
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 598.8
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 597.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 594.2
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 593.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 588.5
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 587.8
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 585.1
GTEX-144GM-1026-SM-79OKU 20-29 years, male 582.4
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 580.0
GTEX-1192X-2526-SM-59868 50-59 years, male 578.0
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 577.0
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 576.8
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 575.7
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 574.8
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 571.9
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 568.9
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 567.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 566.0
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 564.9
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 560.3
GTEX-ZTSS-0926-SM-59865 40-49 years, male 554.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 551.7
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 546.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 541.9
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 540.8
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 536.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 535.3
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 532.9
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 527.3
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 525.6
GTEX-13113-1226-SM-5EGHT 60-69 years, female 524.3
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 521.9
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 521.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 521.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 513.5
GTEX-13111-1426-SM-5DUW3 50-59 years, male 503.1
GTEX-14PN3-2026-SM-68729 60-69 years, female 502.5
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 502.4
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 501.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 497.3
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 493.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 492.6
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 490.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 490.7
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 489.4
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 489.0
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 488.6
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 483.4
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 483.0
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 480.6
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 480.5
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 476.4
GTEX-14PKU-1626-SM-6871C 40-49 years, female 473.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 472.5
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 470.6
GTEX-14PK6-1626-SM-6871I 70-79 years, female 469.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 469.3
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 461.3
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 460.0
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 459.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 457.6
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 455.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 454.6
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 454.4
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 453.6
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 452.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 449.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 445.4
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 442.7
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 440.8
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 440.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 436.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 434.6
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 432.8
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 431.4
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 430.2
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 425.4
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 423.3
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 422.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 417.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 416.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 416.1
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 415.7
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 414.0
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 410.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 410.5
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 407.4
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 407.1
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 405.0
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 402.4
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 400.2
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 396.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 392.6
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 384.5
GTEX-1C475-1426-SM-793CH 40-49 years, female 383.2
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 380.5
GTEX-13O61-1326-SM-5KM31 60-69 years, male 379.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 379.6
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 379.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 378.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 375.9
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 375.2
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 372.3
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 370.9
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 366.0
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 364.3
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 362.3
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 356.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 351.8
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 351.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 343.5
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 339.3
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 338.1
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 336.7
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 335.1
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 334.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 328.0
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 324.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 323.7
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 323.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 323.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 322.8
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 319.5
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 318.0
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 311.0
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 310.6
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 310.0
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 309.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 296.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 289.4
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 288.2
GTEX-183FY-1626-SM-793D8 20-29 years, male 286.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 286.6
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 279.6
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 278.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 273.1
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 272.8
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 263.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 258.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 254.0
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 243.3
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 242.6
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 240.2
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 227.1
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 768.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 768.9
FF:10024-101D6 15,40,85 years, mixed 768.9

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