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RPS27A
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  • RPS27A
BRAIN SUBSTANTIA NIGRA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SUBSTANTIA NIGRA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:1117.0 nTPM
GTEx:1139.3 nTPM
FANTOM5:21.6 Scaled Tags Per Million
Pig:50.9 nTPM

SUBSTANTIA NIGRA - HPA Brain RNA-seq
Avg nTPM 1117.0
Sample id Sample description nTPM
Substantia nigra
nTPM: 1117.0
2241 Male, age 72, unknown 1144.2
2409 Female, age 72, unknown 1140.1
2665 Male, age 74, both hemispheres 1136.3
1851 Male, age 51, unknown 1134.1
2699 Male, age 18, unknown 1115.4
2590 Female, age 75, unknown 1109.1
1916 Female, age 42, unknown 1108.7
2583 Male, age 75, right hemisphere 1094.9
1889 Female, age 72, unknown 1093.5
1941 Male, age 53, unknown 1093.5

SUBSTANTIA NIGRA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1139.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1139.3
Samples: 139

Max nTPM: 4030.0
Min nTPM: 480.3
Std nTPM: 452.6
Median nTPM: 1033.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 4030.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2686.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2454.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2293.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2233.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1924.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1829.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1806.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 1779.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1749.5
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1731.5
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 1716.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 1682.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 1660.8
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 1660.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1638.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 1593.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1521.6
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 1516.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 1487.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 1458.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 1418.0
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 1410.0
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 1399.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1397.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 1388.7
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 1384.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 1377.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 1365.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1350.3
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 1339.5
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 1339.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1313.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 1303.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 1283.5
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 1278.9
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 1274.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 1273.9
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 1270.0
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 1266.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 1262.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 1262.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1259.1
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 1253.5
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 1243.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 1238.4
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 1230.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 1229.2
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 1229.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 1221.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 1211.4
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 1183.6
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 1176.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 1175.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 1173.4
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 1171.6
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 1170.1
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 1165.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 1163.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 1161.5
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 1150.2
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 1145.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 1122.4
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 1120.1
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 1102.6
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 1061.1
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 1058.4
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 1051.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 1044.1
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 1033.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 1030.4
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 1024.5
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 1014.0
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 1009.6
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 998.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 996.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 985.7
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 983.0
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 982.9
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 979.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 976.4
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 976.4
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 974.0
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 954.7
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 954.6
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 950.4
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 945.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 934.6
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 932.2
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 929.7
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 917.2
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 903.5
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 902.9
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 893.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 889.8
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 878.5
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 875.2
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 867.2
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 857.9
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 857.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 846.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 838.9
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 838.8
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 838.1
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 837.9
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 837.1
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 835.4
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 835.4
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 831.1
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 822.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 818.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 812.9
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 809.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 806.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 804.3
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 796.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 796.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 794.7
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 794.0
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 789.4
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 785.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 775.2
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 774.6
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 748.4
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 745.8
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 721.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 713.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 707.7
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 704.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 694.9
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 681.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 679.5
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 648.5
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 599.3
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 587.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 557.3
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 544.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 495.9
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 480.3
Show allShow less

SUBSTANTIA NIGRA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 21.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.6
FF:10158-103A5 76 years, female 21.6

SUBSTANTIA NIGRA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 50.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 50.9
Samples: 4

Max nTPM: 74.4
Min nTPM: 37.7
Sample A Female 74.4
Sample B Female 53.4
Sample C Male 38.1
Sample D Male 37.7

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