MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:16.2 nTPM
HPA:16.2 nTPM
GTEx:19.1 nTPM
FANTOM5:0.5 Scaled Tags Per Million
Pig:11.2 nTPM
Mouse:6.9 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 16.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.7
2219 Male, age 76, both hemispheres 21.8
2586 Male, age 75, left hemisphere 16.6
2411 Female, age 72, unknown 16.4
1870 Female, age 42, unknown 15.4
1830 Male, age 51, unknown 15.0
1827 Male, age 72, unknown 14.7
1833 Male, age 53, unknown 14.7
2828 Female, age 72, unknown 14.4
2019 Male, age 18, unknown 14.3
2666 Male, age 74, left hemisphere 13.3
Dorsal raphe nucleus
nTPM: 16.2
2298 Female, age 72, unknown 17.6
1828 Male, age 53, unknown 16.7
2047 Male, age 72, unknown 16.0
2016 Female, age 72, unknown 15.5
2750 Male, age 76, both hemispheres 15.1
Inferior colliculus
nTPM: 14.9
1890 Male, age 53, unknown 15.3
2849 Male, age 72, unknown 15.1
1848 Female, age 42, unknown 14.8
2097 Female, age 72, unknown 14.2
Median raphe nucleus
nTPM: 14.1
2220 Male, age 76, midline 14.1
Pedunculopontine tegmental nucleus
nTPM: 14.9
2338 Male, age 61, both hemispheres 15.5
2334 Male, age 80, both hemispheres 14.7
1921 Female, age 85, both hemispheres 14.5
Periaquaductal grey, anterior
nTPM: 15.7
2502 Female, age 75, unknown 16.7
1795 Male, age 51, unknown 15.2
1947 Male, age 18, unknown 15.1
Periaquaductal grey, dorsal
nTPM: 15.4
1840 Male, age 53, unknown 16.7
1831 Male, age 72, unknown 15.2
2850 Male, age 76, both hemispheres 15.2
2464 Female, age 72, unknown 14.6
Periaquaductal grey, lateral
nTPM: 16.0
2272 Male, age 74, both hemispheres 16.9
2053 Male, age 18, unknown 16.4
2140 Male, age 76, both hemispheres 14.6
Pretectal area
nTPM: 14.7
2273 Male, age 74, both hemispheres 16.8
2825 Male, age 18, unknown 16.0
2224 Female, age 72, unknown 15.2
2407 Male, age 75, both hemispheres 15.1
2316 Male, age 76, right hemisphere 15.0
2667 Female, age 75, unknown 14.7
1944 Female, age 72, unknown 14.1
1815 Male, age 53, unknown 14.0
1817 Female, age 42, unknown 13.8
1816 Male, age 51, unknown 13.7
2007 Male, age 72, unknown 13.5
Red nucleus
nTPM: 15.2
1954 Female, age 42, unknown 16.0
2769 Male, age 72, unknown 15.9
1821 Female, age 72, unknown 15.7
1904 Male, age 53, unknown 15.7
1865 Male, age 51, unknown 15.5
2588 Male, age 74, left hemisphere 15.5
2227 Male, age 72, unknown 15.4
2503 Female, age 72, unknown 15.2
2823 Male, age 76, right hemisphere 14.8
2584 Male, age 75, left hemisphere 14.5
2785 Male, age 18, unknown 14.0
2725 Female, age 75, unknown 13.9
Substantia nigra
nTPM: 16.0
2590 Female, age 75, unknown 17.6
2699 Male, age 18, unknown 17.6
1851 Male, age 51, unknown 16.9
1916 Female, age 42, unknown 16.7
2241 Male, age 72, unknown 16.6
2583 Male, age 75, right hemisphere 15.7
2665 Male, age 74, both hemispheres 15.3
2409 Female, age 72, unknown 14.8
1889 Female, age 72, unknown 14.6
1941 Male, age 53, unknown 14.4
Superior colliculus
nTPM: 14.9
2664 Male, age 75, both hemispheres 17.1
1995 Male, age 72, unknown 15.4
1796 Male, age 53, unknown 15.2
1839 Male, age 51, unknown 14.8
2261 Male, age 18, unknown 14.8
1895 Male, age 76, right hemisphere 14.7
2587 Male, age 74, left hemisphere 14.4
1913 Female, age 42, unknown 14.3
2087 Female, age 72, unknown 14.3
2668 Female, age 75, unknown 14.0
Ventral tegmental area
nTPM: 15.9
1942 Male, age 51, unknown 16.8
1915 Female, age 42, unknown 16.6
2410 Female, age 72, unknown 16.6
2021 Male, age 53, unknown 15.8
2223 Female, age 72, unknown 15.3
2218 Male, age 76, both hemispheres 14.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 19.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.1
Samples: 139

Max nTPM: 65.0
Min nTPM: 2.0
Std nTPM: 9.9
Median nTPM: 18.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 65.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 46.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 45.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 40.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 39.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 38.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 38.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 37.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 35.8
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 35.5
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 35.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 0.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.5
FF:10158-103A5 76 years, female 0.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 11.2
Pig sample Sample description nTPM
Midbrain
nTPM: 10.4
Samples: 4

Max nTPM: 11.6
Min nTPM: 8.0
Sample A Female 11.6
Sample B Female 11.4
Sample C Male 10.5
Sample D Male 8.0
Periaqueductal gray
nTPM: 11.0
Samples: 3

Max nTPM: 11.6
Min nTPM: 10.6
Sample B Female 10.9
Sample C Male 10.6
Sample D Male 11.6
Substantia nigra
nTPM: 11.2
Samples: 4

Max nTPM: 14.8
Min nTPM: 6.5
Sample A Female 6.5
Sample B Female 11.6
Sample C Male 11.7
Sample D Male 14.8
Superior colliculi
nTPM: 11.1
Samples: 4

Max nTPM: 14.4
Min nTPM: 5.9
Sample A Female 5.9
Sample B Female 14.4
Sample C Male 12.8
Sample D Male 11.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.9
Samples: 4

Max nTPM: 7.5
Min nTPM: 6.4
Sample A Male 7.5
Sample B Male 6.4
Sample C Female 6.4
Sample D Female 7.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68498890 Antisense, RP_050113_02_E08, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.