BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:16.9 nTPM
HPA:16.9 nTPM
GTEx:13.7 nTPM
FANTOM5:10.9 Scaled Tags Per Million
Pig:8.3 nTPM
Mouse:7.3 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA035395
Glial cells Not detected
Neuronal cells Not detected


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 16.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 13.5
2481 Female, age 94, left hemisphere 15.6
1854 Male, age 80, left hemisphere 13.7
2290 Female, age 72, unknown 13.6
2289 Male, age 61, right hemisphere 13.5
2288 Male, age 75, left hemisphere 13.3
1857 Female, age 85, left hemisphere 13.2
2846 Female, age 79, unknown 13.0
1781 Male, age 74, unknown 12.6
Claustrum
nTPM: 13.5
1956 Male, age 74, unknown 13.9
2292 Female, age 85, both hemispheres 13.9
2491 Male, age 75, both hemispheres 13.8
2645 Female, age 72, unknown 13.7
2196 Female, age 79, unknown 13.6
2284 Female, age 91, both hemispheres 13.4
2198 Male, age 80, both hemispheres 13.3
2568 Male, age 61, both hemispheres 13.3
2392 Female, age 94, both hemispheres 12.9
Globus pallidus, externus
nTPM: 16.9
2646 Male, age 61, right hemisphere 18.1
2567 Female, age 72, unknown 17.6
1996 Male, age 80, right hemisphere 17.1
2772 Female, age 79, unknown 16.7
2395 Male, age 75, both hemispheres 14.7
Globus pallidus, internus
nTPM: 16.2
2483 Female, age 94, right hemisphere 18.4
2037 Male, age 80, right hemisphere 16.6
1818 Male, age 74, unknown 16.4
2566 Female, age 72, unknown 16.3
2778 Female, age 91, both hemispheres 16.3
2111 Female, age 85, right hemisphere 15.1
2287 Male, age 75, right hemisphere 14.4
Nucleus accumbens
nTPM: 13.8
2732 Male, age 80, right hemisphere 14.7
2391 Female, age 94, left hemisphere 14.1
1856 Female, age 91, right hemisphere 14.0
2286 Male, age 75, left hemisphere 13.9
2824 Male, age 61, right hemisphere 13.8
2698 Female, age 72, unknown 13.7
1806 Female, age 85, left hemisphere 13.4
1783 Male, age 74, unknown 13.1
Nucleus basalis of Meynert
nTPM: 14.9
2569 Male, age 61, both hemispheres 18.6
2393 Male, age 80, right hemisphere 14.0
2484 Female, age 94, left hemisphere 13.6
2821 Male, age 75, both hemispheres 13.4
Nucleus of the diagonal band
nTPM: 13.7
1812 Female, age 91, both hemispheres 14.5
1979 Male, age 74, unknown 13.8
2775 Male, age 80, right hemisphere 13.7
2029 Male, age 61, right hemisphere 13.4
2195 Female, age 85, both hemispheres 13.0
Olfactory tubercle
nTPM: 13.6
1846 Male, age 80, right hemisphere 13.8
2856 Male, age 75, right hemisphere 13.6
1998 Female, age 91, both hemispheres 13.5
2487 Female, age 94, left hemisphere 13.4
Putamen
nTPM: 13.8
2647 Male, age 75, left hemisphere 14.9
2482 Female, age 94, left hemisphere 14.6
2489 Female, age 72, unknown 14.1
1937 Female, age 91, right hemisphere 13.9
1829 Male, age 74, unknown 13.2
2466 Female, age 79, unknown 13.1
1838 Male, age 80, right hemisphere 13.0
Septal nuclei
nTPM: 13.7
2394 Male, age 61, left hemisphere 14.5
2199 Male, age 80, right hemisphere 14.4
2059 Female, age 85, both hemispheres 14.1
2009 Female, age 91, both hemispheres 13.6
2031 Female, age 72, unknown 13.4
1960 Male, age 74, unknown 12.8
2629 Female, age 94, right hemisphere 12.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 13.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 11.9
Samples: 246

Max nTPM: 45.8
Min nTPM: 0.5
Std nTPM: 8.2
Median nTPM: 10.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 45.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 43.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 41.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 39.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 39.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 37.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 32.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 30.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 30.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 30.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 29.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 12.7
Samples: 246

Max nTPM: 79.7
Min nTPM: 0.8
Std nTPM: 9.6
Median nTPM: 10.3
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 79.7
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 40.0
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 39.9
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 39.4
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 39.3
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 38.2
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 36.6
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 34.9
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 34.7
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 33.8
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 32.5
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Brain - Putamen (basal ganglia)
Average nTPM: 13.7
Samples: 205

Max nTPM: 51.8
Min nTPM: 0.9
Std nTPM: 8.7
Median nTPM: 11.9
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 51.8
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 48.8
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 37.8
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 37.6
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 35.0
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 34.4
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 32.9
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 32.7
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 32.3
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 32.1
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 30.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.4
FF:10164-103B2 76 years, female 0.4
Globus pallidus
Scaled Tags Per Million: 2.4
FF:10175-103C4 60 years, female 3.9
FF:10161-103A8 76 years, female 0.9
Nucleus accumbens
Scaled Tags Per Million: 10.9
FF:10037-101F1 23-56 years, mixed 10.9
Putamen
Scaled Tags Per Million: 2.1
FF:10176-103C5 60 years, female 2.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 8.3
Pig sample Sample description nTPM
Caudate
nTPM: 6.2
Samples: 4

Max nTPM: 7.8
Min nTPM: 3.4
Sample A Female 3.4
Sample B Female 7.8
Sample C Male 7.4
Sample D Male 6.1
Putamen
nTPM: 7.0
Samples: 4

Max nTPM: 8.7
Min nTPM: 4.6
Sample A Female 4.6
Sample B Female 6.7
Sample C Male 8.1
Sample D Male 8.7
Septum
nTPM: 7.6
Samples: 4

Max nTPM: 10.7
Min nTPM: 3.3
Sample A Female 3.3
Sample B Female 7.3
Sample C Male 10.7
Sample D Male 9.0
Ventral pallidum
nTPM: 8.4
Samples: 4

Max nTPM: 11.6
Min nTPM: 2.7
Sample A Female 2.7
Sample B Female 8.3
Sample C Male 11.6
Sample D Male 10.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 7.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 4.1
Samples: 4

Max nTPM: 5.2
Min nTPM: 3.0
Sample A Male 4.2
Sample B Male 5.2
Sample C Female 4.1
Sample D Female 3.0
Septum
nTPM: 7.3
Samples: 4

Max nTPM: 8.6
Min nTPM: 6.2
Sample A Male 6.9
Sample B Male 7.3
Sample C Female 8.6
Sample D Female 6.2
Ventral forebrain
nTPM: 5.0
Samples: 4

Max nTPM: 5.1
Min nTPM: 4.7
Sample A Male 5.1
Sample B Male 5.1
Sample C Female 5.1
Sample D Female 4.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
68498890 Antisense, RP_050113_02_E08, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
68498890 Antisense, RP_050113_02_E08, Mouse strain C57BL/6J (56 days, male) 0.0

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