BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:2.9 nTPM
HPA:2.9 nTPM
GTEx:8.2 nTPM
FANTOM5:8.7 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA042700Antibody HPA044007
Glial cells Not detectedNot detected
Neuronal cells LowNot detected





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 2.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 2.8
1857 Female, age 85, left hemisphere 3.5
2289 Male, age 61, right hemisphere 3.4
2290 Female, age 72, unknown 3.3
1781 Male, age 74, unknown 2.9
2846 Female, age 79, unknown 2.8
1854 Male, age 80, left hemisphere 2.3
2288 Male, age 75, left hemisphere 2.1
2481 Female, age 94, left hemisphere 1.9
Claustrum
nTPM: 1.8
2491 Male, age 75, both hemispheres 2.5
2196 Female, age 79, unknown 2.4
1956 Male, age 74, unknown 2.0
2568 Male, age 61, both hemispheres 2.0
2284 Female, age 91, both hemispheres 1.8
2198 Male, age 80, both hemispheres 1.5
2292 Female, age 85, both hemispheres 1.4
2392 Female, age 94, both hemispheres 1.4
2645 Female, age 72, unknown 1.2
Globus pallidus, externus
nTPM: 1.9
1996 Male, age 80, right hemisphere 2.5
2772 Female, age 79, unknown 2.3
2646 Male, age 61, right hemisphere 1.9
2567 Female, age 72, unknown 1.7
2395 Male, age 75, both hemispheres 1.3
Globus pallidus, internus
nTPM: 1.8
2566 Female, age 72, unknown 2.3
2037 Male, age 80, right hemisphere 2.1
2287 Male, age 75, right hemisphere 1.9
1818 Male, age 74, unknown 1.7
2483 Female, age 94, right hemisphere 1.7
2778 Female, age 91, both hemispheres 1.5
2111 Female, age 85, right hemisphere 1.4
Nucleus accumbens
nTPM: 2.7
2732 Male, age 80, right hemisphere 4.2
1856 Female, age 91, right hemisphere 2.9
1806 Female, age 85, left hemisphere 2.7
1783 Male, age 74, unknown 2.5
2698 Female, age 72, unknown 2.4
2824 Male, age 61, right hemisphere 2.4
2286 Male, age 75, left hemisphere 2.2
2391 Female, age 94, left hemisphere 2.1
Nucleus basalis of Meynert
nTPM: 1.6
2484 Female, age 94, left hemisphere 2.1
2393 Male, age 80, right hemisphere 1.8
2821 Male, age 75, both hemispheres 1.5
2569 Male, age 61, both hemispheres 1.0
Nucleus of the diagonal band
nTPM: 2.9
1979 Male, age 74, unknown 3.9
2195 Female, age 85, both hemispheres 3.2
1812 Female, age 91, both hemispheres 3.0
2775 Male, age 80, right hemisphere 2.7
2029 Male, age 61, right hemisphere 1.9
Olfactory tubercle
nTPM: 2.9
2487 Female, age 94, left hemisphere 3.5
1998 Female, age 91, both hemispheres 3.0
2856 Male, age 75, right hemisphere 3.0
1846 Male, age 80, right hemisphere 2.0
Putamen
nTPM: 2.7
1838 Male, age 80, right hemisphere 3.6
2466 Female, age 79, unknown 3.6
1937 Female, age 91, right hemisphere 3.4
2489 Female, age 72, unknown 2.8
1829 Male, age 74, unknown 2.0
2647 Male, age 75, left hemisphere 1.8
2482 Female, age 94, left hemisphere 1.7
Septal nuclei
nTPM: 2.9
1960 Male, age 74, unknown 4.3
2199 Male, age 80, right hemisphere 3.5
2629 Female, age 94, right hemisphere 3.5
2009 Female, age 91, both hemispheres 3.2
2031 Female, age 72, unknown 2.5
2059 Female, age 85, both hemispheres 2.0
2394 Male, age 61, left hemisphere 1.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 8.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 6.9
Samples: 246

Max nTPM: 23.5
Min nTPM: 1.1
Std nTPM: 3.7
Median nTPM: 5.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 23.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 20.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 19.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 18.5
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 17.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 15.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 15.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 15.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 14.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 14.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 14.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 8.2
Samples: 246

Max nTPM: 26.6
Min nTPM: 0.0
Std nTPM: 4.2
Median nTPM: 7.5
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 26.6
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 25.2
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 23.1
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 20.1
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 19.6
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 17.8
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 17.6
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 17.1
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 16.9
GTEX-145LS-0011-R6b-SM-5PNWL 60-69 years, female 16.9
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 16.7
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Brain - Putamen (basal ganglia)
Average nTPM: 5.6
Samples: 205

Max nTPM: 13.7
Min nTPM: 0.0
Std nTPM: 2.8
Median nTPM: 5.1
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 13.7
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 13.7
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 13.6
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 13.4
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 13.0
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 13.0
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 12.8
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 12.4
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 12.2
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 12.2
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 10.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 8.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 8.7
FF:10164-103B2 76 years, female 8.7
Globus pallidus
Scaled Tags Per Million: 4.5
FF:10161-103A8 76 years, female 5.0
FF:10175-103C4 60 years, female 3.9
Nucleus accumbens
Scaled Tags Per Million: 4.7
FF:10037-101F1 23-56 years, mixed 4.7
Putamen
Scaled Tags Per Million: 2.3
FF:10176-103C5 60 years, female 2.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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