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TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:75.9 nTPM
HPA:61.5 nTPM
GTEx:75.9 nTPM
FANTOM5:128.3 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 61.5
overview
Male, age 65
Small intestine sample 232
nTPM: 60.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 67.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 57.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 60.4

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 75.9
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 75.9
Samples: 187

Max nTPM: 174.8
Min nTPM: 41.2
Std nTPM: 18.4
Median nTPM: 72.4
GTEX-111YS-1426-SM-5GID8 60-69 years, male 174.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 131.3
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 128.3
GTEX-1122O-1326-SM-5H11F 60-69 years, female 127.4
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 123.8
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 117.0
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 116.1
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 114.7
GTEX-ZTSS-0926-SM-59865 40-49 years, male 112.3
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 112.2
GTEX-YFCO-1326-SM-664NV 40-49 years, male 111.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 110.6
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 108.4
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 107.7
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 107.0
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 105.3
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 104.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 103.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 102.2
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 100.8
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 100.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 99.2
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 97.6
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 96.0
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 94.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 93.6
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 92.4
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 92.0
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 91.5
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 91.3
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 89.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 89.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 87.8
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 87.2
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 86.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 86.8
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 86.4
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 85.4
GTEX-1C475-1426-SM-793CH 40-49 years, female 83.7
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 83.7
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 83.6
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 83.0
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 83.0
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 82.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 82.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 82.6
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 82.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 82.3
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 81.8
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 81.8
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 81.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 81.1
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 81.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 81.0
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 80.9
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 80.7
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 80.7
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 80.4
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 80.3
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 80.1
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 80.0
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 80.0
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 80.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 79.8
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 79.3
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 79.3
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 78.5
GTEX-117YX-0326-SM-5GICL 50-59 years, male 78.2
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 78.0
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 77.5
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 77.4
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 77.4
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 76.9
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 76.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 76.7
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 76.6
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 75.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 75.8
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 75.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 75.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 75.4
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 74.7
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 73.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 73.5
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 73.4
GTEX-183FY-1626-SM-793D8 20-29 years, male 73.1
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 73.1
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 73.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 72.9
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 72.9
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 72.9
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 72.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 72.4
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 72.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 72.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 72.3
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 72.0
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 71.7
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 71.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 71.3
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 70.6
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 70.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 70.2
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 70.1
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 70.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 70.0
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 69.3
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 69.3
GTEX-144GM-1026-SM-79OKU 20-29 years, male 69.2
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 69.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 68.9
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 68.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 68.8
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 68.6
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 68.4
GTEX-1192X-2526-SM-59868 50-59 years, male 68.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 67.9
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 67.8
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 67.1
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 67.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 67.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 66.9
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 66.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 66.7
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 66.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 66.6
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 66.6
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 66.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 66.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 66.3
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 66.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 65.9
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 65.5
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 65.4
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 65.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 65.2
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 65.1
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 65.1
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 65.0
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 64.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 64.8
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 64.6
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 64.6
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 64.4
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 64.3
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 64.1
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 64.1
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 64.1
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 63.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 63.4
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 63.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 62.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 62.1
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 62.0
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 61.7
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 61.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 61.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 61.0
GTEX-13O61-1326-SM-5KM31 60-69 years, male 60.3
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 60.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 60.1
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 60.1
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 60.0
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 59.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 58.8
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 58.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 58.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 58.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 57.4
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 57.3
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 57.0
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 57.0
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 56.6
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 55.4
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 54.4
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 54.3
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 53.1
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 52.5
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 51.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 50.8
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 50.1
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 49.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 47.3
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 46.8
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 45.2
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 43.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 41.2
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 128.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 128.3
FF:10024-101D6 15,40,85 years, mixed 128.3

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