We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
UBA3
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • UBA3
BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:240.4 nTPM
HPA:240.4 nTPM
FANTOM5:44.9 Scaled Tags Per Million
Pig:31.5 nTPM
Allen mouse:4.4 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max nTPM 240.4
Sample id Sample description nTPM
Area postrema
nTPM: 190.8
2306 Male, age 80, both hemispheres 226.6
2799 Male, age 61, both hemispheres 202.7
2054 Male, age 76, both hemispheres 143.1
Cuneate nuclei
nTPM: 186.6
2376 Male, age 61, both hemispheres 239.2
2381 Male, age 80, both hemispheres 205.5
2131 Male, age 76, both hemispheres 115.0
Dorsal medullary reticular nucleus
nTPM: 147.1
2373 Male, age 61, both hemispheres 190.8
2088 Male, age 76, both hemispheres 135.7
2040 Female, age 85, both hemispheres 114.9
Dorsal motor vagal complex
nTPM: 111.3
2185 Male, age 76, both hemispheres 169.0
2643 Male, age 74, both hemispheres 131.5
2797 Male, age 61, both hemispheres 131.0
2807 Female, age 85, both hemispheres 126.1
2813 Female, age 72, unknown 112.6
2000 Male, age 74, unknown 100.9
2844 Male, age 55, unknown 62.3
2133 Female, age 91, both hemispheres 56.9
Gigantocellular reticular nuclei, medullary
nTPM: 150.3
2314 Male, age 61, both hemispheres 275.8
2387 Female, age 91, both hemispheres 164.5
1876 Female, age 85, both hemispheres 145.9
2310 Male, age 80, both hemispheres 124.9
2022 Male, age 76, right hemisphere 109.4
2462 Male, age 74, both hemispheres 81.3
Gigantocellular reticular nuclei, pars
nTPM: 137.9
2330 Male, age 80, both hemispheres 171.5
2336 Male, age 61, both hemispheres 156.7
2706 Male, age 80, both hemispheres 152.7
2084 Female, age 85, both hemispheres 107.7
2168 Male, age 76, both hemispheres 101.0
Inferior olive
nTPM: 153.1
2178 Male, age 61, both hemispheres 195.9
2379 Male, age 80, both hemispheres 170.0
2563 Male, age 74, both hemispheres 151.6
2628 Female, age 91, both hemispheres 138.5
2085 Female, age 85, both hemispheres 109.6
Lateral medullary reticular nucleus
nTPM: 173.7
2305 Male, age 74, both hemispheres 222.5
2374 Male, age 61, both hemispheres 204.0
2852 Male, age 80, both hemispheres 167.9
2190 Female, age 85, both hemispheres 152.8
2044 Male, age 76, both hemispheres 152.2
2804 Female, age 91, both hemispheres 142.8
Medial vestibular nucleus
nTPM: 119.3
2803 Female, age 91, both hemispheres 143.4
2801 Male, age 74, both hemispheres 141.6
2093 Male, age 80, both hemispheres 127.6
2624 Male, age 61, both hemispheres 125.7
2743 Female, age 85, both hemispheres 109.3
2134 Male, age 76, both hemispheres 68.1
Motor hypoglossal nucleus
nTPM: 110.9
2182 Male, age 80, both hemispheres 180.0
2277 Male, age 76, both hemispheres 107.0
2125 Female, age 91, both hemispheres 104.2
2132 Female, age 85, both hemispheres 94.5
2461 Male, age 61, both hemispheres 68.8
Nucleus ambiguus
nTPM: 188.6
2071 Male, age 76, both hemispheres 223.8
2096 Female, age 85, both hemispheres 153.3
Nucleus cuneatus
nTPM: 179.7
2380 Male, age 80, both hemispheres 245.1
2808 Female, age 85, both hemispheres 220.9
2805 Female, age 91, both hemispheres 180.9
2100 Male, age 76, both hemispheres 173.0
2562 Male, age 61, both hemispheres 129.4
2564 Male, age 74, both hemispheres 128.9
Nucleus gracilis
nTPM: 217.5
2382 Male, age 80, both hemispheres 251.3
2627 Male, age 74, both hemispheres 203.5
2299 Female, age 85, both hemispheres 197.7
Nucleus raphe magnus
nTPM: 101.0
2459 Female, age 91, both hemispheres 159.1
2051 Male, age 76, both hemispheres 135.8
2328 Male, age 80, both hemispheres 129.0
2455 Male, age 74, both hemispheres 93.3
2172 Female, age 85, both hemispheres 58.4
2160 Male, age 61, both hemispheres 30.3
Nucleus raphe obscurus
nTPM: 240.4
2142 Male, age 76, midline 323.2
2800 Male, age 61, midline 222.5
2845 Female, age 85, midline 175.4
Nucleus raphe pallidus
nTPM: 204.0
2145 Male, age 76, midline 315.0
1924 Male, age 61, midline 180.4
2183 Male, age 80, midline 116.7
Nucleus tractus solitarii
nTPM: 75.5
2656 Male, age 76, both hemispheres 88.4
2307 Male, age 80, both hemispheres 85.3
2144 Female, age 91, right hemisphere 67.9
2191 Female, age 85, both hemispheres 60.3
Parvicellular reticular nuclei
nTPM: 162.7
2095 Male, age 76, both hemispheres 186.7
2119 Male, age 80, both hemispheres 170.6
2558 Male, age 74, both hemispheres 130.9
Parvicellular reticular nuclei, medullary
nTPM: 93.3
2189 Female, age 91, both hemispheres 110.1
2091 Female, age 85, both hemispheres 87.6
2181 Male, age 80, left hemisphere 82.2
Peritrigeminal nucleus
nTPM: 150.4
2179 Male, age 61, both hemispheres 193.9
2136 Male, age 76, both hemispheres 160.0
2067 Female, age 85, both hemispheres 97.2
Prepositus hypoglossal nucleus
nTPM: 96.1
2855 Female, age 85, right hemisphere 104.1
2086 Male, age 80, both hemispheres 88.1
Spinal trigeminal nucleus, caudal
nTPM: 137.7
2312 Male, age 61, both hemispheres 199.5
2642 Male, age 74, both hemispheres 152.9
2308 Male, age 80, both hemispheres 140.5
2447 Male, age 76, both hemispheres 105.6
2390 Female, age 91, both hemispheres 90.1
Spinal trigeminal nucleus, interpolar
nTPM: 96.2
2389 Female, age 91, both hemispheres 102.1
2066 Male, age 76, right hemisphere 99.5
2625 Male, age 61, both hemispheres 93.7
2386 Female, age 85, both hemispheres 93.3
2033 Male, age 80, both hemispheres 92.2
Spinal vestibular nucleus
nTPM: 123.2
2384 Male, age 74, both hemispheres 154.3
2748 Male, age 76, both hemispheres 144.1
2806 Female, age 85, both hemispheres 122.0
2186 Female, age 91, both hemispheres 117.8
2796 Male, age 61, both hemispheres 115.1
2780 Male, age 80, both hemispheres 85.6
Ventral medullary reticular nucleus
nTPM: 155.6
2372 Male, age 61, both hemispheres 200.0
2060 Male, age 76, both hemispheres 111.2
Ventrolateral medulla, A1-C1 cell groups
nTPM: 136.9
2118 Male, age 80, both hemispheres 183.4
1986 Male, age 76, both hemispheres 153.5
2180 Male, age 61, both hemispheres 146.9
2302 Female, age 91, both hemispheres 103.7
2741 Female, age 85, both hemispheres 97.1

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 44.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 44.9
FF:10155-103A2 76 years, female 50.5
FF:10038-101F2 18-64 years, mixed 50.1
FF:10174-103C3 60 years, female 34.0

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 31.5
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 31.5
Samples: 4

Max nTPM: 34.6
Min nTPM: 29.4
Sample A Female 34.6
Sample B Female 29.4
Sample C Male 30.7
Sample D Male 31.2

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 4.4
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 4.4
413804 Antisense, RP_040809_01_F03, Mouse strain C57BL/6J (56 days, male) 4.4

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.