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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:291.3 nTPM
HPA:291.3 nTPM
GTEx:325.3 nTPM
FANTOM5:140.6 Scaled Tags Per Million
Pig:123.4 nTPM
Mouse:361.8 nTPM
Allen mouse:12.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 291.3
Sample id Sample description nTPM
Amygdala
nTPM: 222.8
2814 Male, age 76, right hemisphere 254.2
1987 Female, age 91, left hemisphere 240.6
2517 Female, age 94, left hemisphere 231.7
2514 Male, age 75, right hemisphere 196.0
2695 Female, age 67, right hemisphere 191.3
Basal amygdala
nTPM: 236.5
2685 Female, age 94, left hemisphere 264.2
2243 Female, age 91, right hemisphere 259.6
2110 Male, age 80, left hemisphere 250.6
1955 Male, age 76, both hemispheres 239.0
2827 Female, age 67, right hemisphere 206.0
2609 Male, age 75, right hemisphere 199.6
Central amygdala
nTPM: 230.1
1905 Male, age 76, both hemispheres 250.4
2239 Male, age 80, left hemisphere 241.2
2701 Female, age 91, right hemisphere 233.6
2826 Female, age 94, left hemisphere 225.4
2515 Male, age 75, right hemisphere 199.7
Corticomedial amygdala
nTPM: 239.9
2429 Female, age 94, left hemisphere 264.2
2829 Male, age 80, left hemisphere 257.6
2242 Female, age 91, right hemisphere 253.0
2240 Male, age 76, both hemispheres 236.4
2535 Female, age 67, right hemisphere 228.5
2428 Male, age 75, right hemisphere 199.9
Lateral amygdala
nTPM: 222.1
1883 Male, age 76, both hemispheres 261.1
2534 Female, age 94, left hemisphere 241.7
2255 Female, age 91, right hemisphere 229.6
2256 Male, age 80, left hemisphere 207.0
2516 Male, age 75, right hemisphere 199.1
2830 Female, age 67, right hemisphere 194.0
Stria terminalis, bed nucleus
nTPM: 291.3
1974 Female, age 91, both hemispheres 342.3
2486 Female, age 94, both hemispheres 309.4
2201 Male, age 74, unknown 222.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 325.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 325.3
Samples: 152

Max nTPM: 873.4
Min nTPM: 32.1
Std nTPM: 164.9
Median nTPM: 306.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 873.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 868.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 841.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 833.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 733.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 709.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 620.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 587.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 586.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 575.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 571.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 550.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 544.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 534.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 534.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 531.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 530.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 517.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 516.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 501.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 499.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 495.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 486.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 486.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 478.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 472.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 471.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 466.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 456.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 456.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 454.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 437.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 427.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 426.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 426.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 422.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 418.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 414.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 414.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 413.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 413.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 412.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 409.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 406.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 400.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 393.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 391.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 390.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 384.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 379.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 379.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 370.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 369.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 364.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 362.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 361.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 359.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 358.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 351.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 346.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 345.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 340.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 332.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 332.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 331.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 331.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 322.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 321.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 320.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 318.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 317.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 313.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 312.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 312.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 311.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 306.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 306.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 303.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 302.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 297.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 289.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 289.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 283.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 280.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 278.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 275.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 273.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 273.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 272.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 269.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 267.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 257.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 256.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 256.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 254.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 253.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 248.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 248.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 245.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 237.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 232.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 229.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 229.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 228.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 227.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 226.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 225.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 223.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 220.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 218.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 218.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 217.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 205.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 201.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 198.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 198.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 197.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 197.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 197.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 197.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 195.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 193.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 191.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 188.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 188.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 182.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 180.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 177.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 176.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 171.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 164.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 162.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 160.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 156.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 154.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 152.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 144.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 144.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 130.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 130.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 113.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 106.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 103.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 91.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 91.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 84.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 80.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 77.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 65.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 49.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 38.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 32.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 140.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 140.6
FF:10151-102I7 76 years, female 140.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 123.4
Pig sample Sample description nTPM
Amygdala
nTPM: 123.4
Samples: 4

Max nTPM: 207.8
Min nTPM: 80.1
Sample A Female 207.8
Sample B Female 80.1
Sample C Male 92.1
Sample D Male 113.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 361.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 361.8
Samples: 4

Max nTPM: 380.6
Min nTPM: 347.5
Sample A Male 352.8
Sample B Male 366.4
Sample C Female 380.6
Sample D Female 347.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 12.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 12.8
75988633 Antisense, RP_060620_02_E05, Mouse strain C57BL/6J (56 days, male) 13.9
71280733 Antisense, RP_050818_01_E04, Mouse strain C57BL/6J (56 days, male) 11.8

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