MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:235.8 nTPM
HPA:235.8 nTPM
GTEx:188.9 nTPM
FANTOM5:6.6 Scaled Tags Per Million
Pig:188.1 nTPM
Mouse:380.6 nTPM
Allen mouse:10.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 235.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 214.1
2666 Male, age 74, left hemisphere 240.4
2219 Male, age 76, both hemispheres 227.5
2411 Female, age 72, unknown 221.4
1827 Male, age 72, unknown 218.7
2019 Male, age 18, unknown 217.1
1870 Female, age 42, unknown 205.1
1833 Male, age 53, unknown 203.5
2828 Female, age 72, unknown 203.3
2586 Male, age 75, left hemisphere 202.4
1830 Male, age 51, unknown 201.7
Dorsal raphe nucleus
nTPM: 211.6
2298 Female, age 72, unknown 230.2
2750 Male, age 76, both hemispheres 218.8
2047 Male, age 72, unknown 215.0
1828 Male, age 53, unknown 203.2
2016 Female, age 72, unknown 190.6
Inferior colliculus
nTPM: 216.0
2097 Female, age 72, unknown 237.0
1848 Female, age 42, unknown 210.6
1890 Male, age 53, unknown 209.4
2849 Male, age 72, unknown 206.7
Median raphe nucleus
nTPM: 235.8
2220 Male, age 76, midline 235.8
Pedunculopontine tegmental nucleus
nTPM: 228.1
2334 Male, age 80, both hemispheres 234.6
1921 Female, age 85, both hemispheres 233.8
2338 Male, age 61, both hemispheres 215.9
Periaquaductal grey, anterior
nTPM: 215.0
1795 Male, age 51, unknown 218.3
1947 Male, age 18, unknown 214.8
2502 Female, age 75, unknown 211.9
Periaquaductal grey, dorsal
nTPM: 206.9
1840 Male, age 53, unknown 211.0
2850 Male, age 76, both hemispheres 207.4
1831 Male, age 72, unknown 204.8
2464 Female, age 72, unknown 204.4
Periaquaductal grey, lateral
nTPM: 200.4
2053 Male, age 18, unknown 202.8
2272 Male, age 74, both hemispheres 200.6
2140 Male, age 76, both hemispheres 197.8
Pretectal area
nTPM: 222.8
1944 Female, age 72, unknown 254.7
1817 Female, age 42, unknown 248.5
1816 Male, age 51, unknown 246.0
2007 Male, age 72, unknown 240.2
1815 Male, age 53, unknown 232.7
2667 Female, age 75, unknown 216.2
2224 Female, age 72, unknown 214.0
2825 Male, age 18, unknown 204.0
2407 Male, age 75, both hemispheres 200.0
2273 Male, age 74, both hemispheres 198.1
2316 Male, age 76, right hemisphere 196.0
Red nucleus
nTPM: 199.2
2785 Male, age 18, unknown 215.2
1821 Female, age 72, unknown 212.7
1954 Female, age 42, unknown 204.3
2584 Male, age 75, left hemisphere 203.3
2769 Male, age 72, unknown 198.0
2227 Male, age 72, unknown 197.8
1904 Male, age 53, unknown 197.2
2823 Male, age 76, right hemisphere 197.2
1865 Male, age 51, unknown 195.2
2503 Female, age 72, unknown 192.1
2725 Female, age 75, unknown 190.7
2588 Male, age 74, left hemisphere 186.7
Substantia nigra
nTPM: 225.5
1941 Male, age 53, unknown 257.4
1916 Female, age 42, unknown 252.5
1889 Female, age 72, unknown 250.4
1851 Male, age 51, unknown 235.9
2241 Male, age 72, unknown 228.2
2665 Male, age 74, both hemispheres 217.1
2409 Female, age 72, unknown 216.8
2699 Male, age 18, unknown 206.8
2583 Male, age 75, right hemisphere 196.0
2590 Female, age 75, unknown 193.6
Superior colliculus
nTPM: 220.9
2668 Female, age 75, unknown 308.1
2087 Female, age 72, unknown 235.5
1796 Male, age 53, unknown 218.4
1895 Male, age 76, right hemisphere 217.8
2261 Male, age 18, unknown 217.8
1913 Female, age 42, unknown 207.3
1839 Male, age 51, unknown 206.7
2587 Male, age 74, left hemisphere 201.3
2664 Male, age 75, both hemispheres 198.7
1995 Male, age 72, unknown 197.2
Ventral tegmental area
nTPM: 221.7
2410 Female, age 72, unknown 241.8
2218 Male, age 76, both hemispheres 237.9
1915 Female, age 42, unknown 225.6
1942 Male, age 51, unknown 211.6
2223 Female, age 72, unknown 210.6
2021 Male, age 53, unknown 202.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 188.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 188.9
Samples: 139

Max nTPM: 991.9
Min nTPM: 19.1
Std nTPM: 156.7
Median nTPM: 153.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 991.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 822.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 616.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 540.5
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 508.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 475.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 473.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 471.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 441.0
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 412.0
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 384.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 6.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 6.6
FF:10158-103A5 76 years, female 6.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 188.1
Pig sample Sample description nTPM
Midbrain
nTPM: 144.1
Samples: 4

Max nTPM: 232.0
Min nTPM: 43.4
Sample A Female 43.4
Sample B Female 113.8
Sample C Male 232.0
Sample D Male 187.3
Periaqueductal gray
nTPM: 111.6
Samples: 3

Max nTPM: 146.7
Min nTPM: 88.3
Sample B Female 88.3
Sample C Male 146.7
Sample D Male 99.9
Substantia nigra
nTPM: 136.8
Samples: 4

Max nTPM: 227.2
Min nTPM: 28.6
Sample A Female 227.2
Sample B Female 90.8
Sample C Male 200.4
Sample D Male 28.6
Superior colliculi
nTPM: 188.2
Samples: 4

Max nTPM: 252.5
Min nTPM: 128.2
Sample A Female 189.0
Sample B Female 128.2
Sample C Male 252.5
Sample D Male 182.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 380.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 380.6
Samples: 4

Max nTPM: 388.2
Min nTPM: 372.8
Sample A Male 377.4
Sample B Male 388.2
Sample C Female 372.8
Sample D Female 384.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.1
75988633 Antisense, RP_060620_02_E05, Mouse strain C57BL/6J (56 days, male) 10.7
71280733 Antisense, RP_050818_01_E04, Mouse strain C57BL/6J (56 days, male) 9.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.