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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:48.8 nTPM
HPA:48.8 nTPM
GTEx:45.8 nTPM
FANTOM5:24.6 Scaled Tags Per Million
Pig:10.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 48.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 47.2
1981 Female, age 72, midline 48.1
2565 Male, age 75, midline 47.8
2816 Male, age 47, midline 47.7
2194 Female, age 79, both hemispheres 46.3
2048 Male, age 55, midline 45.9
Cervical spinal cord, dorsal horn
nTPM: 47.3
2173 Female, age 72, unknown 50.9
2296 Male, age 66, both hemispheres 50.5
2721 Male, age 90, both hemispheres 46.3
2069 Male, age 47, both hemispheres 46.0
1877 Male, age 55, unknown 45.8
2297 Male, age 75, both hemispheres 44.4
Cervical spinal cord, ventral horn
nTPM: 48.8
2098 Female, age 72, unknown 50.7
2480 Male, age 75, both hemispheres 50.2
2295 Male, age 66, both hemispheres 50.0
2809 Male, age 90, both hemispheres 48.4
2820 Female, age 79, both hemispheres 48.1
2068 Male, age 55, unknown 45.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 45.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 45.8
Samples: 159

Max nTPM: 80.3
Min nTPM: 20.0
Std nTPM: 12.9
Median nTPM: 44.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 80.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 75.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 74.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 72.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 71.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 70.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 69.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 69.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 65.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 65.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 65.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 65.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 65.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 64.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 64.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 63.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 62.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 62.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 62.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 61.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 61.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 61.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 60.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 59.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 59.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 59.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 59.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 59.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 58.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 58.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 58.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 57.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 56.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 56.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 56.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 56.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 55.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 55.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 55.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 54.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 54.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 54.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 54.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 54.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 53.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 53.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 53.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 52.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 52.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 52.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 52.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 51.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 51.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 51.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 51.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 50.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 50.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 50.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 49.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 49.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 49.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 49.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 49.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 48.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 48.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 48.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 47.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 47.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 47.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 47.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 47.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 46.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 46.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 46.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 45.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 45.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 45.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 45.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 45.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 44.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 44.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 44.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 43.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 43.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 43.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 43.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 43.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 43.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 43.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 43.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 42.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 42.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 42.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 42.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 42.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 42.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 41.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 41.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 41.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 41.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 41.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 40.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 40.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 40.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 40.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 40.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 39.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 39.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 39.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 39.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 39.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 38.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 38.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 38.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 37.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 37.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 36.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 36.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 36.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 36.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 36.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 36.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 35.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 35.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 35.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 35.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 35.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 34.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 34.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 34.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 33.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 33.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 33.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 33.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 32.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 32.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 31.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 31.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 31.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 30.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 30.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 29.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 29.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 28.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 28.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 27.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 26.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 26.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 25.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 24.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 23.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 23.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 22.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 21.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 21.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 21.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 20.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 20.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 20.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 24.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 24.6
FF:10181-103D1 60 years, female 25.8
FF:10159-103A6 76 years, female 23.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 10.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 9.5
Samples: 4

Max nTPM: 12.0
Min nTPM: 8.6
Sample A Female 8.6
Sample B Female 8.7
Sample C Male 12.0
Sample D Male 8.6
Ventral spinal cord
nTPM: 10.3
Samples: 4

Max nTPM: 11.1
Min nTPM: 9.6
Sample A Female 9.6
Sample B Female 10.5
Sample C Male 11.1
Sample D Male 9.9

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