MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:52.5 nTPM
HPA:52.5 nTPM
GTEx:25.4 nTPM
FANTOM5:3.5 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 52.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.3
2219 Male, age 76, both hemispheres 33.0
2586 Male, age 75, left hemisphere 29.6
2666 Male, age 74, left hemisphere 29.6
1827 Male, age 72, unknown 26.6
2411 Female, age 72, unknown 26.1
1833 Male, age 53, unknown 25.6
2828 Female, age 72, unknown 23.6
1870 Female, age 42, unknown 22.5
1830 Male, age 51, unknown 21.1
2019 Male, age 18, unknown 15.4
Dorsal raphe nucleus
nTPM: 35.1
2047 Male, age 72, unknown 46.6
2298 Female, age 72, unknown 39.0
2750 Male, age 76, both hemispheres 34.3
1828 Male, age 53, unknown 28.9
2016 Female, age 72, unknown 26.8
Inferior colliculus
nTPM: 26.1
2849 Male, age 72, unknown 29.2
1848 Female, age 42, unknown 26.0
1890 Male, age 53, unknown 24.9
2097 Female, age 72, unknown 24.1
Median raphe nucleus
nTPM: 52.5
2220 Male, age 76, midline 52.5
Pedunculopontine tegmental nucleus
nTPM: 24.5
1921 Female, age 85, both hemispheres 30.0
2334 Male, age 80, both hemispheres 27.4
2338 Male, age 61, both hemispheres 16.1
Periaquaductal grey, anterior
nTPM: 29.9
1947 Male, age 18, unknown 32.0
2502 Female, age 75, unknown 29.0
1795 Male, age 51, unknown 28.8
Periaquaductal grey, dorsal
nTPM: 31.9
1840 Male, age 53, unknown 42.5
2850 Male, age 76, both hemispheres 30.4
2464 Female, age 72, unknown 27.7
1831 Male, age 72, unknown 26.9
Periaquaductal grey, lateral
nTPM: 24.5
2140 Male, age 76, both hemispheres 27.6
2053 Male, age 18, unknown 26.7
2272 Male, age 74, both hemispheres 19.3
Pretectal area
nTPM: 24.5
2224 Female, age 72, unknown 32.1
2825 Male, age 18, unknown 31.5
1816 Male, age 51, unknown 27.5
1944 Female, age 72, unknown 25.6
2667 Female, age 75, unknown 24.2
2407 Male, age 75, both hemispheres 22.1
1815 Male, age 53, unknown 21.9
2316 Male, age 76, right hemisphere 21.8
2007 Male, age 72, unknown 21.3
2273 Male, age 74, both hemispheres 21.2
1817 Female, age 42, unknown 20.7
Red nucleus
nTPM: 16.1
2584 Male, age 75, left hemisphere 23.5
2725 Female, age 75, unknown 17.3
2503 Female, age 72, unknown 16.7
2227 Male, age 72, unknown 16.4
2769 Male, age 72, unknown 15.9
1954 Female, age 42, unknown 15.7
2785 Male, age 18, unknown 15.7
2588 Male, age 74, left hemisphere 15.3
1821 Female, age 72, unknown 15.0
1904 Male, age 53, unknown 14.9
2823 Male, age 76, right hemisphere 14.0
1865 Male, age 51, unknown 13.3
Substantia nigra
nTPM: 32.0
1916 Female, age 42, unknown 47.0
2241 Male, age 72, unknown 39.9
2665 Male, age 74, both hemispheres 36.9
1851 Male, age 51, unknown 36.1
2699 Male, age 18, unknown 31.6
2590 Female, age 75, unknown 27.4
2409 Female, age 72, unknown 27.0
1889 Female, age 72, unknown 25.8
1941 Male, age 53, unknown 25.1
2583 Male, age 75, right hemisphere 23.0
Superior colliculus
nTPM: 24.6
2664 Male, age 75, both hemispheres 32.5
1796 Male, age 53, unknown 28.8
1839 Male, age 51, unknown 26.3
2261 Male, age 18, unknown 26.3
2087 Female, age 72, unknown 26.1
1895 Male, age 76, right hemisphere 25.9
2668 Female, age 75, unknown 24.9
2587 Male, age 74, left hemisphere 22.2
1913 Female, age 42, unknown 16.9
1995 Male, age 72, unknown 15.7
Ventral tegmental area
nTPM: 35.4
2218 Male, age 76, both hemispheres 42.7
1915 Female, age 42, unknown 38.7
2021 Male, age 53, unknown 37.8
1942 Male, age 51, unknown 37.2
2410 Female, age 72, unknown 30.9
2223 Female, age 72, unknown 25.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.4
Samples: 139

Max nTPM: 62.2
Min nTPM: 1.5
Std nTPM: 13.2
Median nTPM: 24.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 62.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 60.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 59.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 58.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 57.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 50.0
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 48.5
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 47.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 46.7
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 46.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 45.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 3.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 3.5
FF:10158-103A5 76 years, female 3.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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