MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:13.2 nTPM
HPA:13.2 nTPM
GTEx:18.7 nTPM
FANTOM5:5.6 Scaled Tags Per Million
Pig:75.0 nTPM
Mouse:26.4 nTPM
Allen mouse:1.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 13.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 10.9
2666 Male, age 74, left hemisphere 13.1
1827 Male, age 72, unknown 11.7
2219 Male, age 76, both hemispheres 11.2
2586 Male, age 75, left hemisphere 11.2
2411 Female, age 72, unknown 11.1
1870 Female, age 42, unknown 10.6
1833 Male, age 53, unknown 10.4
2019 Male, age 18, unknown 9.9
1830 Male, age 51, unknown 9.8
2828 Female, age 72, unknown 9.7
Dorsal raphe nucleus
nTPM: 10.4
1828 Male, age 53, unknown 11.7
2298 Female, age 72, unknown 10.7
2047 Male, age 72, unknown 10.0
2750 Male, age 76, both hemispheres 10.0
2016 Female, age 72, unknown 9.7
Inferior colliculus
nTPM: 11.9
2097 Female, age 72, unknown 13.2
1890 Male, age 53, unknown 12.3
1848 Female, age 42, unknown 11.2
2849 Male, age 72, unknown 10.7
Median raphe nucleus
nTPM: 10.9
2220 Male, age 76, midline 10.9
Pedunculopontine tegmental nucleus
nTPM: 10.4
1921 Female, age 85, both hemispheres 10.9
2334 Male, age 80, both hemispheres 10.7
2338 Male, age 61, both hemispheres 9.4
Periaquaductal grey, anterior
nTPM: 11.5
1795 Male, age 51, unknown 11.7
1947 Male, age 18, unknown 11.4
2502 Female, age 75, unknown 11.3
Periaquaductal grey, dorsal
nTPM: 10.7
1840 Male, age 53, unknown 11.7
1831 Male, age 72, unknown 11.0
2464 Female, age 72, unknown 10.2
2850 Male, age 76, both hemispheres 10.0
Periaquaductal grey, lateral
nTPM: 10.6
2053 Male, age 18, unknown 11.7
2272 Male, age 74, both hemispheres 10.6
2140 Male, age 76, both hemispheres 9.5
Pretectal area
nTPM: 11.8
1944 Female, age 72, unknown 15.4
1816 Male, age 51, unknown 14.4
2007 Male, age 72, unknown 12.4
1815 Male, age 53, unknown 11.9
1817 Female, age 42, unknown 11.9
2224 Female, age 72, unknown 11.1
2825 Male, age 18, unknown 11.1
2667 Female, age 75, unknown 10.9
2316 Male, age 76, right hemisphere 10.7
2407 Male, age 75, both hemispheres 10.7
2273 Male, age 74, both hemispheres 9.8
Red nucleus
nTPM: 10.9
1821 Female, age 72, unknown 12.7
2584 Male, age 75, left hemisphere 12.3
1904 Male, age 53, unknown 11.1
2588 Male, age 74, left hemisphere 11.0
1954 Female, age 42, unknown 10.9
2725 Female, age 75, unknown 10.8
2769 Male, age 72, unknown 10.7
2503 Female, age 72, unknown 10.6
2227 Male, age 72, unknown 10.5
1865 Male, age 51, unknown 10.4
2785 Male, age 18, unknown 10.0
2823 Male, age 76, right hemisphere 9.7
Substantia nigra
nTPM: 13.2
1916 Female, age 42, unknown 16.7
2241 Male, age 72, unknown 15.4
1851 Male, age 51, unknown 14.6
2409 Female, age 72, unknown 14.3
1889 Female, age 72, unknown 13.0
2699 Male, age 18, unknown 12.4
2665 Male, age 74, both hemispheres 11.9
2583 Male, age 75, right hemisphere 11.6
2590 Female, age 75, unknown 11.5
1941 Male, age 53, unknown 10.2
Superior colliculus
nTPM: 11.6
2668 Female, age 75, unknown 14.1
2261 Male, age 18, unknown 13.7
2087 Female, age 72, unknown 13.0
1796 Male, age 53, unknown 11.4
1895 Male, age 76, right hemisphere 11.0
1913 Female, age 42, unknown 11.0
2664 Male, age 75, both hemispheres 10.7
1839 Male, age 51, unknown 10.4
2587 Male, age 74, left hemisphere 10.4
1995 Male, age 72, unknown 10.0
Ventral tegmental area
nTPM: 12.2
1915 Female, age 42, unknown 13.7
2410 Female, age 72, unknown 13.6
2218 Male, age 76, both hemispheres 12.4
2021 Male, age 53, unknown 11.6
1942 Male, age 51, unknown 11.2
2223 Female, age 72, unknown 10.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 18.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.7
Samples: 139

Max nTPM: 61.5
Min nTPM: 4.4
Std nTPM: 10.1
Median nTPM: 16.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 61.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 48.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 47.6
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 46.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 43.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 40.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 39.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 39.1
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 36.9
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 35.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 34.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 5.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 5.6
FF:10158-103A5 76 years, female 5.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 75.0
Pig sample Sample description nTPM
Midbrain
nTPM: 69.2
Samples: 4

Max nTPM: 96.8
Min nTPM: 44.9
Sample A Female 44.9
Sample B Female 56.5
Sample C Male 96.8
Sample D Male 78.7
Periaqueductal gray
nTPM: 58.4
Samples: 3

Max nTPM: 68.7
Min nTPM: 49.9
Sample B Female 49.9
Sample C Male 68.7
Sample D Male 56.6
Substantia nigra
nTPM: 55.0
Samples: 4

Max nTPM: 74.0
Min nTPM: 32.8
Sample A Female 74.0
Sample B Female 48.1
Sample C Male 65.2
Sample D Male 32.8
Superior colliculi
nTPM: 75.0
Samples: 4

Max nTPM: 99.4
Min nTPM: 51.6
Sample A Female 80.0
Sample B Female 51.6
Sample C Male 99.4
Sample D Male 69.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 26.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.4
Samples: 4

Max nTPM: 28.1
Min nTPM: 24.9
Sample A Male 24.9
Sample B Male 26.6
Sample C Female 28.1
Sample D Female 25.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
70300469 Antisense, RP_050607_01_F02, Mouse strain C57BL/6J (56 days, male) 3.0
75041527 Antisense, RP_060412_04_E10, Mouse strain C57BL/6J (56 days, male) 1.3
71211308 Antisense, RP_050816_01_B12, Mouse strain C57BL/6J (56 days, male) 1.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.