MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:272.7 nTPM
HPA:272.7 nTPM
GTEx:287.2 nTPM
FANTOM5:500.3 Scaled Tags Per Million
Pig:112.8 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 272.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 245.9
1833 Male, age 53, unknown 269.6
2828 Female, age 72, unknown 266.1
2411 Female, age 72, unknown 264.8
2586 Male, age 75, left hemisphere 261.3
1870 Female, age 42, unknown 256.8
1830 Male, age 51, unknown 248.9
2219 Male, age 76, both hemispheres 240.5
1827 Male, age 72, unknown 238.0
2019 Male, age 18, unknown 210.0
2666 Male, age 74, left hemisphere 203.2
Dorsal raphe nucleus
nTPM: 261.5
2047 Male, age 72, unknown 275.9
1828 Male, age 53, unknown 266.3
2016 Female, age 72, unknown 262.8
2298 Female, age 72, unknown 251.5
2750 Male, age 76, both hemispheres 251.2
Inferior colliculus
nTPM: 272.7
2097 Female, age 72, unknown 294.9
1890 Male, age 53, unknown 279.3
1848 Female, age 42, unknown 266.1
2849 Male, age 72, unknown 250.6
Median raphe nucleus
nTPM: 251.4
2220 Male, age 76, midline 251.4
Pedunculopontine tegmental nucleus
nTPM: 245.9
1921 Female, age 85, both hemispheres 253.3
2334 Male, age 80, both hemispheres 252.2
2338 Male, age 61, both hemispheres 232.2
Periaquaductal grey, anterior
nTPM: 230.0
2502 Female, age 75, unknown 270.9
1947 Male, age 18, unknown 218.5
1795 Male, age 51, unknown 200.6
Periaquaductal grey, dorsal
nTPM: 236.0
2850 Male, age 76, both hemispheres 255.2
2464 Female, age 72, unknown 251.0
1840 Male, age 53, unknown 235.0
1831 Male, age 72, unknown 203.0
Periaquaductal grey, lateral
nTPM: 223.2
2140 Male, age 76, both hemispheres 238.8
2053 Male, age 18, unknown 234.4
2272 Male, age 74, both hemispheres 196.5
Pretectal area
nTPM: 225.5
2667 Female, age 75, unknown 243.0
2825 Male, age 18, unknown 238.8
1944 Female, age 72, unknown 237.3
2316 Male, age 76, right hemisphere 236.1
1817 Female, age 42, unknown 231.9
1815 Male, age 53, unknown 230.2
1816 Male, age 51, unknown 227.1
2224 Female, age 72, unknown 221.2
2407 Male, age 75, both hemispheres 214.7
2273 Male, age 74, both hemispheres 209.7
2007 Male, age 72, unknown 190.8
Red nucleus
nTPM: 258.7
1821 Female, age 72, unknown 304.8
1904 Male, age 53, unknown 289.0
1954 Female, age 42, unknown 286.7
2227 Male, age 72, unknown 285.5
2769 Male, age 72, unknown 283.7
2503 Female, age 72, unknown 270.7
1865 Male, age 51, unknown 269.6
2823 Male, age 76, right hemisphere 243.0
2785 Male, age 18, unknown 230.2
2588 Male, age 74, left hemisphere 225.5
2725 Female, age 75, unknown 212.8
2584 Male, age 75, left hemisphere 202.4
Substantia nigra
nTPM: 264.7
1916 Female, age 42, unknown 343.9
2699 Male, age 18, unknown 315.1
2241 Male, age 72, unknown 301.8
1851 Male, age 51, unknown 284.1
1889 Female, age 72, unknown 241.9
1941 Male, age 53, unknown 239.5
2409 Female, age 72, unknown 236.1
2590 Female, age 75, unknown 232.7
2583 Male, age 75, right hemisphere 229.6
2665 Male, age 74, both hemispheres 223.0
Superior colliculus
nTPM: 240.3
1913 Female, age 42, unknown 254.4
2664 Male, age 75, both hemispheres 252.9
2668 Female, age 75, unknown 252.7
1995 Male, age 72, unknown 247.2
2261 Male, age 18, unknown 241.6
2087 Female, age 72, unknown 240.3
1839 Male, age 51, unknown 238.7
1895 Male, age 76, right hemisphere 231.8
1796 Male, age 53, unknown 225.8
2587 Male, age 74, left hemisphere 218.1
Ventral tegmental area
nTPM: 257.1
1915 Female, age 42, unknown 284.8
2410 Female, age 72, unknown 266.3
2218 Male, age 76, both hemispheres 261.2
2223 Female, age 72, unknown 255.8
1942 Male, age 51, unknown 250.2
2021 Male, age 53, unknown 224.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 287.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 287.2
Samples: 139

Max nTPM: 557.6
Min nTPM: 131.8
Std nTPM: 77.9
Median nTPM: 283.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 557.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 522.1
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 491.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 485.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 482.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 417.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 415.7
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 414.8
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 410.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 406.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 399.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 500.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 500.3
FF:10158-103A5 76 years, female 500.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 112.8
Pig sample Sample description nTPM
Midbrain
nTPM: 112.8
Samples: 4

Max nTPM: 192.9
Min nTPM: 79.0
Sample A Female 192.9
Sample B Female 93.9
Sample C Male 85.4
Sample D Male 79.0
Periaqueductal gray
nTPM: 87.1
Samples: 3

Max nTPM: 91.6
Min nTPM: 78.8
Sample B Female 90.8
Sample C Male 91.6
Sample D Male 78.8
Substantia nigra
nTPM: 106.5
Samples: 4

Max nTPM: 129.1
Min nTPM: 71.8
Sample A Female 126.9
Sample B Female 71.8
Sample C Male 98.0
Sample D Male 129.1
Superior colliculi
nTPM: 91.4
Samples: 4

Max nTPM: 127.9
Min nTPM: 54.3
Sample A Female 127.9
Sample B Female 54.3
Sample C Male 87.8
Sample D Male 95.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.