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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:36.0 nTPM
HPA:36.0 nTPM
GTEx:111.2 nTPM
FANTOM5:73.9 Scaled Tags Per Million
Pig:82.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 36.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 32.2
2565 Male, age 75, midline 39.6
2816 Male, age 47, midline 37.7
2194 Female, age 79, both hemispheres 34.5
1981 Female, age 72, midline 25.8
2048 Male, age 55, midline 23.6
Cervical spinal cord, dorsal horn
nTPM: 27.9
2296 Male, age 66, both hemispheres 33.4
2069 Male, age 47, both hemispheres 30.5
2173 Female, age 72, unknown 29.6
2297 Male, age 75, both hemispheres 29.5
1877 Male, age 55, unknown 23.0
2721 Male, age 90, both hemispheres 21.3
Cervical spinal cord, ventral horn
nTPM: 36.0
2480 Male, age 75, both hemispheres 50.7
2295 Male, age 66, both hemispheres 39.3
2809 Male, age 90, both hemispheres 37.5
2068 Male, age 55, unknown 31.6
2820 Female, age 79, both hemispheres 30.9
2098 Female, age 72, unknown 26.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 111.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 111.2
Samples: 159

Max nTPM: 174.8
Min nTPM: 53.3
Std nTPM: 24.3
Median nTPM: 109.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 174.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 174.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 173.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 173.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 169.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 160.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 156.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 156.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 156.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 155.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 150.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 149.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 148.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 148.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 146.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 145.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 142.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 141.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 139.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 139.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 137.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 136.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 136.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 136.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 136.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 135.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 135.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 134.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 133.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 131.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 131.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 131.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 130.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 130.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 129.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 129.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 127.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 126.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 125.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 124.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 123.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 122.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 122.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 122.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 121.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 121.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 121.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 120.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 120.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 119.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 119.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 119.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 118.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 118.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 118.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 118.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 117.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 117.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 116.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 116.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 116.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 116.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 114.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 114.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 114.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 114.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 113.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 113.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 113.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 113.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 113.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 113.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 112.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 112.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 110.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 110.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 110.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 110.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 109.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 109.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 108.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 108.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 108.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 107.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 107.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 107.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 107.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 106.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 106.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 106.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 106.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 106.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 105.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 105.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 105.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 105.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 105.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 104.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 104.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 104.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 103.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 103.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 103.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 102.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 102.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 102.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 102.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 101.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 100.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 100.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 100.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 99.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 98.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 98.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 97.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 97.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 97.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 97.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 96.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 94.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 94.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 94.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 92.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 91.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 91.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 90.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 90.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 89.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 89.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 89.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 88.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 88.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 87.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 87.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 86.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 86.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 85.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 85.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 85.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 83.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 82.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 81.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 81.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 80.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 80.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 80.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 79.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 77.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 77.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 76.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 74.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 71.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 69.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 66.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 65.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 64.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 64.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 63.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 53.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 73.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 73.9
FF:10159-103A6 76 years, female 85.1
FF:10181-103D1 60 years, female 62.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 82.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 82.9
Samples: 4

Max nTPM: 147.1
Min nTPM: 34.7
Sample A Female 34.7
Sample B Female 88.6
Sample C Male 147.1
Sample D Male 61.0
Ventral spinal cord
nTPM: 13.6
Samples: 4

Max nTPM: 36.7
Min nTPM: 3.3
Sample A Female 3.3
Sample B Female 6.1
Sample C Male 36.7
Sample D Male 8.2

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