HIPPOCAMPAL FORMATION - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:26.6 nTPM
HPA:26.6 nTPM
GTEx:12.6 nTPM
FANTOM5:78.0 Scaled Tags Per Million
Pig:3.5 nTPM
Mouse:51.8 nTPM
Allen mouse:0.7 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPUS - Antibody stainingi
Antibody HPA058426
Glial cells Not detected
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 26.6
Sample id Sample description nTPM
Hippocampus
nTPM: 26.6
1855 Male, age 76, left hemisphere 32.3
1898 Male, age 80, left hemisphere 31.0
1911 Female, age 85, right hemisphere 28.1
2148 Female, age 91, left hemisphere 28.1
2529 Female, age 94, left hemisphere 25.7
2621 Female, age 67, right hemisphere 14.6
Dentate gyrus
nTPM: 21.5
2010 Male, age 76, both hemispheres 31.8
2528 Male, age 74, both hemispheres 29.5
1927 Female, age 91, both hemispheres 20.2
2246 Female, age 85, both hemispheres 19.9
2530 Female, age 94, left hemisphere 15.9
2531 Female, age 67, both hemispheres 11.6
Entorhinal gyrus
nTPM: 18.1
2117 Female, age 91, right hemisphere 33.2
1787 Male, age 76, left hemisphere 20.2
1938 Female, age 85, left hemisphere 16.8
2686 Male, age 75, right hemisphere 15.1
2764 Male, age 80, right hemisphere 13.0
2613 Female, age 94, left hemisphere 10.1
Hippocampus, CA1
nTPM: 23.0
1873 Female, age 85, both hemispheres 33.6
2082 Female, age 91, right hemisphere 24.1
2527 Male, age 74, both hemispheres 22.2
2045 Male, age 76, both hemispheres 21.6
2749 Male, age 80, left hemisphere 13.4
Hippocampus, CA2
nTPM: 20.4
2113 Female, age 91, right hemisphere 27.5
1963 Male, age 80, left hemisphere 25.6
2249 Male, age 74, both hemispheres 25.4
1940 Female, age 85, left hemisphere 15.8
2437 Female, age 94, left hemisphere 15.2
1892 Male, age 76, both hemispheres 12.9
Hippocampus, CA3
nTPM: 17.6
1891 Female, age 85, both hemispheres 25.7
2620 Female, age 94, left hemisphere 21.5
1867 Male, age 76, both hemispheres 17.8
2436 Male, age 74, both hemispheres 17.4
2861 Female, age 67, both hemispheres 12.7
2137 Male, age 80, left hemisphere 10.4
Parahippocampal cortex
nTPM: 15.3
2018 Male, age 76, both hemispheres 23.7
1990 Female, age 91, right hemisphere 19.9
2250 Female, age 67, right hemisphere 17.4
2692 Male, age 74, both hemispheres 15.9
2245 Female, age 91, both hemispheres 15.4
1850 Male, age 80, both hemispheres 15.0
1933 Female, age 85, both hemispheres 12.9
2622 Female, age 67, right hemisphere 12.4
2693 Female, age 94, both hemispheres 11.0
2532 Female, age 72, left hemisphere 9.4
Perirhinal gyrus
nTPM: 14.0
1847 Female, age 91, left hemisphere 18.1
2848 Male, age 76, right hemisphere 14.7
2521 Female, age 94, right hemisphere 13.7
1794 Male, age 80, right hemisphere 11.9
1841 Female, age 85, right hemisphere 11.6
Subiculum
nTPM: 20.2
2729 Female, age 91, right hemisphere 38.0
2619 Male, age 74, both hemispheres 20.1
2042 Male, age 76, both hemispheres 18.6
1901 Male, age 80, both hemispheres 15.0
2438 Female, age 94, left hemisphere 14.8
1977 Female, age 85, both hemispheres 14.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 12.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 12.6
Samples: 197

Max nTPM: 37.1
Min nTPM: 1.3
Std nTPM: 6.0
Median nTPM: 11.1
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 37.1
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 33.3
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 30.7
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 28.0
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 27.8
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 27.6
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 27.6
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 26.1
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 25.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 25.8
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 25.5
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 78.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 78.0
FF:10153-102I9 76 years, female 104.8
FF:10169-103B7 60 years, female 51.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 3.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 3.6
Samples: 4

Max nTPM: 6.3
Min nTPM: 2.4
Sample A Female 2.4
Sample B Female 3.0
Sample C Male 2.5
Sample D Male 6.3
Entorhinal cortex
nTPM: 2.8
Samples: 4

Max nTPM: 4.6
Min nTPM: 1.6
Sample A Female 2.4
Sample B Female 4.6
Sample C Male 2.7
Sample D Male 1.6
Subiculum
nTPM: 2.2
Samples: 4

Max nTPM: 3.0
Min nTPM: 1.4
Sample A Female 2.1
Sample B Female 1.4
Sample C Male 2.4
Sample D Male 3.0
Ventral hippocampus
nTPM: 2.5
Samples: 4

Max nTPM: 3.0
Min nTPM: 2.2
Sample A Female 2.2
Sample B Female 2.4
Sample C Male 3.0
Sample D Male 2.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 51.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 51.8
Samples: 4

Max nTPM: 52.5
Min nTPM: 50.3
Sample A Male 52.5
Sample B Male 50.3
Sample C Female 52.2
Sample D Female 52.0
Hippocampal formation
nTPM: 47.2
Samples: 4

Max nTPM: 57.6
Min nTPM: 40.0
Sample A Male 57.6
Sample B Male 46.7
Sample C Female 40.0
Sample D Female 44.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.7
643 Antisense, RP_Baylor_103249, Mouse strain C57BL/6J (56 days, male) 0.7
644 Antisense, RP_Baylor_103249, Mouse strain C57BL/6J (56 days, male) 0.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.