BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:84.5 nTPM
HPA:84.5 nTPM
GTEx:94.2 nTPM
FANTOM5:47.3 Scaled Tags Per Million
Pig:189.9 nTPM
Mouse:115.5 nTPM
Allen mouse:3.2 Expression energy

CAUDATE - Antibody stainingi
Antibody CAB029996
Glial cells Not detected
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 84.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 84.5
2481 Female, age 94, left hemisphere 91.4
1857 Female, age 85, left hemisphere 90.5
2288 Male, age 75, left hemisphere 89.9
1854 Male, age 80, left hemisphere 85.8
2289 Male, age 61, right hemisphere 82.5
2290 Female, age 72, unknown 82.2
2846 Female, age 79, unknown 80.1
1781 Male, age 74, unknown 73.7
Claustrum
nTPM: 71.5
2645 Female, age 72, unknown 75.0
2198 Male, age 80, both hemispheres 74.5
2568 Male, age 61, both hemispheres 74.2
1956 Male, age 74, unknown 71.8
2196 Female, age 79, unknown 71.3
2284 Female, age 91, both hemispheres 70.9
2491 Male, age 75, both hemispheres 70.2
2292 Female, age 85, both hemispheres 68.2
2392 Female, age 94, both hemispheres 67.1
Globus pallidus, externus
nTPM: 71.6
2646 Male, age 61, right hemisphere 75.6
1996 Male, age 80, right hemisphere 72.8
2772 Female, age 79, unknown 72.2
2395 Male, age 75, both hemispheres 70.3
2567 Female, age 72, unknown 67.3
Globus pallidus, internus
nTPM: 69.1
2287 Male, age 75, right hemisphere 73.3
2483 Female, age 94, right hemisphere 73.1
2037 Male, age 80, right hemisphere 69.8
1818 Male, age 74, unknown 68.2
2778 Female, age 91, both hemispheres 67.3
2111 Female, age 85, right hemisphere 66.2
2566 Female, age 72, unknown 65.5
Nucleus accumbens
nTPM: 78.8
2286 Male, age 75, left hemisphere 99.2
1806 Female, age 85, left hemisphere 87.7
2391 Female, age 94, left hemisphere 77.3
2732 Male, age 80, right hemisphere 74.2
2824 Male, age 61, right hemisphere 74.2
1856 Female, age 91, right hemisphere 72.8
1783 Male, age 74, unknown 72.7
2698 Female, age 72, unknown 72.1
Nucleus basalis of Meynert
nTPM: 76.8
2484 Female, age 94, left hemisphere 81.4
2569 Male, age 61, both hemispheres 78.7
2393 Male, age 80, right hemisphere 76.4
2821 Male, age 75, both hemispheres 70.7
Nucleus of the diagonal band
nTPM: 80.5
1979 Male, age 74, unknown 89.1
2195 Female, age 85, both hemispheres 81.7
2775 Male, age 80, right hemisphere 77.4
1812 Female, age 91, both hemispheres 77.1
2029 Male, age 61, right hemisphere 77.0
Olfactory tubercle
nTPM: 78.4
1846 Male, age 80, right hemisphere 84.3
2856 Male, age 75, right hemisphere 84.0
1998 Female, age 91, both hemispheres 73.1
2487 Female, age 94, left hemisphere 72.4
Putamen
nTPM: 81.7
2647 Male, age 75, left hemisphere 89.1
2466 Female, age 79, unknown 86.2
2482 Female, age 94, left hemisphere 83.7
2489 Female, age 72, unknown 83.3
1838 Male, age 80, right hemisphere 81.3
1829 Male, age 74, unknown 75.3
1937 Female, age 91, right hemisphere 73.1
Septal nuclei
nTPM: 78.2
2059 Female, age 85, both hemispheres 91.1
1960 Male, age 74, unknown 86.2
2031 Female, age 72, unknown 79.6
2009 Female, age 91, both hemispheres 73.5
2394 Male, age 61, left hemisphere 73.4
2199 Male, age 80, right hemisphere 72.6
2629 Female, age 94, right hemisphere 71.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 94.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 77.2
Samples: 246

Max nTPM: 292.3
Min nTPM: 14.5
Std nTPM: 40.3
Median nTPM: 67.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 292.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 211.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 182.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 170.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 168.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 167.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 167.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 164.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 164.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 161.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 154.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 65.1
Samples: 246

Max nTPM: 364.3
Min nTPM: 6.8
Std nTPM: 46.1
Median nTPM: 53.4
GTEX-ZE7O-0011-R6a-SM-57WCI 50-59 years, female 364.3
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 330.3
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 240.9
GTEX-WZTO-0011-R6B-SM-4E3J6 40-49 years, male 235.6
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 208.7
GTEX-15DYW-0011-R6b-SM-6PALA 60-69 years, female 196.8
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 181.2
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 174.0
GTEX-1GN1U-0011-R6a-SM-CKZNO 50-59 years, female 168.8
GTEX-13FXS-0011-R6b-SM-5L3F7 50-59 years, male 156.5
GTEX-17F97-0011-R6a-SM-7EPGS 50-59 years, male 146.6
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Brain - Putamen (basal ganglia)
Average nTPM: 94.2
Samples: 205

Max nTPM: 317.7
Min nTPM: 13.4
Std nTPM: 50.7
Median nTPM: 83.7
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 317.7
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 303.7
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 229.8
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 219.5
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 215.4
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 213.9
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 202.5
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 197.3
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 190.5
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 189.6
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 189.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 47.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 21.6
FF:10164-103B2 76 years, female 21.6
Globus pallidus
Scaled Tags Per Million: 15.1
FF:10175-103C4 60 years, female 19.7
FF:10161-103A8 76 years, female 10.4
Nucleus accumbens
Scaled Tags Per Million: 47.3
FF:10037-101F1 23-56 years, mixed 47.3
Putamen
Scaled Tags Per Million: 45.5
FF:10176-103C5 60 years, female 45.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 189.9
Pig sample Sample description nTPM
Caudate
nTPM: 146.1
Samples: 4

Max nTPM: 193.3
Min nTPM: 100.2
Sample A Female 100.2
Sample B Female 169.3
Sample C Male 193.3
Sample D Male 121.5
Putamen
nTPM: 189.9
Samples: 4

Max nTPM: 285.6
Min nTPM: 147.0
Sample A Female 147.2
Sample B Female 179.9
Sample C Male 285.6
Sample D Male 147.0
Septum
nTPM: 132.4
Samples: 4

Max nTPM: 186.3
Min nTPM: 104.7
Sample A Female 114.8
Sample B Female 186.3
Sample C Male 104.7
Sample D Male 123.9
Ventral pallidum
nTPM: 155.1
Samples: 4

Max nTPM: 230.9
Min nTPM: 106.6
Sample A Female 118.2
Sample B Female 230.9
Sample C Male 164.6
Sample D Male 106.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 115.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 69.0
Samples: 4

Max nTPM: 75.4
Min nTPM: 59.8
Sample A Male 59.8
Sample B Male 71.2
Sample C Female 69.7
Sample D Female 75.4
Septum
nTPM: 105.6
Samples: 4

Max nTPM: 131.0
Min nTPM: 74.7
Sample A Male 74.7
Sample B Male 131.0
Sample C Female 115.6
Sample D Female 100.9
Ventral forebrain
nTPM: 115.6
Samples: 4

Max nTPM: 134.9
Min nTPM: 105.2
Sample A Male 105.2
Sample B Male 108.9
Sample C Female 134.9
Sample D Female 113.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.2
74272041 Antisense, RP_050913_01_C02, Mouse strain C57BL/6J (56 days, male) 3.2
71487079 Antisense, RP_050913_01_C02, Mouse strain C57BL/6J (56 days, male) 3.0
Pallidum
Expression energy: 2.8
71487079 Antisense, RP_050913_01_C02, Mouse strain C57BL/6J (56 days, male) 2.8
74272041 Antisense, RP_050913_01_C02, Mouse strain C57BL/6J (56 days, male) 2.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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