MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:106.2 nTPM
HPA:106.2 nTPM
GTEx:56.8 nTPM
FANTOM5:53.5 Scaled Tags Per Million
Pig:24.2 nTPM
Mouse:51.5 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 106.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 86.1
2586 Male, age 75, left hemisphere 135.3
2828 Female, age 72, unknown 119.1
1827 Male, age 72, unknown 89.5
2666 Male, age 74, left hemisphere 84.1
1870 Female, age 42, unknown 77.9
1830 Male, age 51, unknown 77.0
1833 Male, age 53, unknown 75.9
2411 Female, age 72, unknown 70.5
2019 Male, age 18, unknown 69.5
2219 Male, age 76, both hemispheres 61.9
Dorsal raphe nucleus
nTPM: 91.6
1828 Male, age 53, unknown 105.4
2016 Female, age 72, unknown 103.8
2047 Male, age 72, unknown 97.0
2298 Female, age 72, unknown 80.8
2750 Male, age 76, both hemispheres 71.0
Inferior colliculus
nTPM: 106.2
1848 Female, age 42, unknown 112.0
2849 Male, age 72, unknown 107.1
1890 Male, age 53, unknown 102.9
2097 Female, age 72, unknown 102.8
Median raphe nucleus
nTPM: 59.9
2220 Male, age 76, midline 59.9
Pedunculopontine tegmental nucleus
nTPM: 59.6
1921 Female, age 85, both hemispheres 78.9
2334 Male, age 80, both hemispheres 63.2
2338 Male, age 61, both hemispheres 36.7
Periaquaductal grey, anterior
nTPM: 89.4
2502 Female, age 75, unknown 93.4
1947 Male, age 18, unknown 87.8
1795 Male, age 51, unknown 87.2
Periaquaductal grey, dorsal
nTPM: 95.5
1840 Male, age 53, unknown 107.5
2464 Female, age 72, unknown 99.2
2850 Male, age 76, both hemispheres 89.5
1831 Male, age 72, unknown 85.6
Periaquaductal grey, lateral
nTPM: 92.3
2053 Male, age 18, unknown 105.4
2140 Male, age 76, both hemispheres 104.5
2272 Male, age 74, both hemispheres 67.0
Pretectal area
nTPM: 85.3
2825 Male, age 18, unknown 104.6
2316 Male, age 76, right hemisphere 95.0
2273 Male, age 74, both hemispheres 91.5
1944 Female, age 72, unknown 88.8
2667 Female, age 75, unknown 88.2
1817 Female, age 42, unknown 88.0
1815 Male, age 53, unknown 81.2
1816 Male, age 51, unknown 79.9
2407 Male, age 75, both hemispheres 75.6
2007 Male, age 72, unknown 73.7
2224 Female, age 72, unknown 71.8
Red nucleus
nTPM: 96.7
1954 Female, age 42, unknown 121.7
2503 Female, age 72, unknown 115.5
2588 Male, age 74, left hemisphere 112.1
2769 Male, age 72, unknown 106.8
2227 Male, age 72, unknown 104.0
2725 Female, age 75, unknown 98.0
1821 Female, age 72, unknown 97.7
2823 Male, age 76, right hemisphere 96.6
1865 Male, age 51, unknown 88.2
1904 Male, age 53, unknown 85.2
2584 Male, age 75, left hemisphere 67.6
2785 Male, age 18, unknown 67.4
Substantia nigra
nTPM: 69.6
2699 Male, age 18, unknown 79.0
1889 Female, age 72, unknown 76.9
2409 Female, age 72, unknown 74.6
2583 Male, age 75, right hemisphere 73.7
1916 Female, age 42, unknown 71.6
2241 Male, age 72, unknown 66.7
1851 Male, age 51, unknown 64.9
1941 Male, age 53, unknown 64.5
2590 Female, age 75, unknown 63.3
2665 Male, age 74, both hemispheres 60.6
Superior colliculus
nTPM: 87.1
2664 Male, age 75, both hemispheres 111.3
1839 Male, age 51, unknown 98.5
1796 Male, age 53, unknown 91.1
2261 Male, age 18, unknown 90.8
2087 Female, age 72, unknown 86.8
1895 Male, age 76, right hemisphere 85.4
2668 Female, age 75, unknown 84.4
2587 Male, age 74, left hemisphere 81.4
1995 Male, age 72, unknown 80.4
1913 Female, age 42, unknown 61.2
Ventral tegmental area
nTPM: 69.9
2410 Female, age 72, unknown 82.6
1942 Male, age 51, unknown 81.7
1915 Female, age 42, unknown 72.5
2021 Male, age 53, unknown 70.5
2218 Male, age 76, both hemispheres 57.4
2223 Female, age 72, unknown 55.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 56.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 56.8
Samples: 139

Max nTPM: 145.6
Min nTPM: 12.4
Std nTPM: 27.4
Median nTPM: 52.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 145.6
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 136.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 128.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 125.4
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 124.1
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 116.1
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 115.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 114.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 108.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 103.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 101.9
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 53.5
FF:10158-103A5 76 years, female 53.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.2
Pig sample Sample description nTPM
Midbrain
nTPM: 24.2
Samples: 4

Max nTPM: 29.4
Min nTPM: 18.8
Sample A Female 29.4
Sample B Female 18.8
Sample C Male 23.8
Sample D Male 24.9
Periaqueductal gray
nTPM: 17.8
Samples: 3

Max nTPM: 20.1
Min nTPM: 13.7
Sample B Female 20.1
Sample C Male 19.6
Sample D Male 13.7
Substantia nigra
nTPM: 23.5
Samples: 4

Max nTPM: 31.6
Min nTPM: 17.1
Sample A Female 23.0
Sample B Female 17.1
Sample C Male 22.1
Sample D Male 31.6
Superior colliculi
nTPM: 20.7
Samples: 4

Max nTPM: 27.3
Min nTPM: 11.1
Sample A Female 27.3
Sample B Female 11.1
Sample C Male 23.0
Sample D Male 21.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 51.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 51.5
Samples: 4

Max nTPM: 55.1
Min nTPM: 46.0
Sample A Male 54.2
Sample B Male 50.6
Sample C Female 46.0
Sample D Female 55.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
73712870 Antisense, RP_051206_02_E11, Mouse strain C57BL/6J (56 days, male) 0.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.