MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:38.3 nTPM
HPA:38.3 nTPM
GTEx:39.5 nTPM
FANTOM5:100.0 Scaled Tags Per Million
Pig:54.8 nTPM
Mouse:53.0 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 38.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.7
1870 Female, age 42, unknown 37.3
2411 Female, age 72, unknown 34.7
1830 Male, age 51, unknown 34.3
1827 Male, age 72, unknown 34.2
2019 Male, age 18, unknown 34.1
1833 Male, age 53, unknown 34.0
2828 Female, age 72, unknown 33.1
2586 Male, age 75, left hemisphere 32.7
2666 Male, age 74, left hemisphere 31.4
2219 Male, age 76, both hemispheres 30.8
Dorsal raphe nucleus
nTPM: 34.4
2750 Male, age 76, both hemispheres 34.8
1828 Male, age 53, unknown 34.6
2047 Male, age 72, unknown 34.3
2016 Female, age 72, unknown 34.2
2298 Female, age 72, unknown 34.2
Inferior colliculus
nTPM: 35.3
2097 Female, age 72, unknown 35.7
2849 Male, age 72, unknown 35.5
1848 Female, age 42, unknown 35.0
1890 Male, age 53, unknown 34.8
Median raphe nucleus
nTPM: 38.1
2220 Male, age 76, midline 38.1
Pedunculopontine tegmental nucleus
nTPM: 36.5
2338 Male, age 61, both hemispheres 38.0
1921 Female, age 85, both hemispheres 36.3
2334 Male, age 80, both hemispheres 35.2
Periaquaductal grey, anterior
nTPM: 36.0
1947 Male, age 18, unknown 37.2
2502 Female, age 75, unknown 36.4
1795 Male, age 51, unknown 34.3
Periaquaductal grey, dorsal
nTPM: 36.6
2850 Male, age 76, both hemispheres 43.3
1840 Male, age 53, unknown 35.2
1831 Male, age 72, unknown 34.0
2464 Female, age 72, unknown 33.8
Periaquaductal grey, lateral
nTPM: 38.3
2140 Male, age 76, both hemispheres 44.8
2272 Male, age 74, both hemispheres 36.3
2053 Male, age 18, unknown 33.7
Pretectal area
nTPM: 35.4
2273 Male, age 74, both hemispheres 36.8
2224 Female, age 72, unknown 36.7
2316 Male, age 76, right hemisphere 36.3
1817 Female, age 42, unknown 36.2
2825 Male, age 18, unknown 35.9
1815 Male, age 53, unknown 35.6
1816 Male, age 51, unknown 35.0
2667 Female, age 75, unknown 35.0
2007 Male, age 72, unknown 34.8
1944 Female, age 72, unknown 34.5
2407 Male, age 75, both hemispheres 32.6
Red nucleus
nTPM: 35.0
2725 Female, age 75, unknown 37.6
1865 Male, age 51, unknown 37.0
1904 Male, age 53, unknown 36.5
1954 Female, age 42, unknown 36.4
1821 Female, age 72, unknown 35.8
2227 Male, age 72, unknown 35.4
2503 Female, age 72, unknown 35.1
2785 Male, age 18, unknown 34.9
2769 Male, age 72, unknown 34.3
2823 Male, age 76, right hemisphere 33.4
2588 Male, age 74, left hemisphere 32.9
2584 Male, age 75, left hemisphere 31.0
Substantia nigra
nTPM: 35.4
2241 Male, age 72, unknown 38.4
1916 Female, age 42, unknown 37.4
2699 Male, age 18, unknown 37.1
1851 Male, age 51, unknown 36.7
2409 Female, age 72, unknown 36.1
1889 Female, age 72, unknown 35.5
1941 Male, age 53, unknown 34.7
2590 Female, age 75, unknown 33.4
2583 Male, age 75, right hemisphere 32.6
2665 Male, age 74, both hemispheres 32.4
Superior colliculus
nTPM: 34.5
1895 Male, age 76, right hemisphere 35.7
2587 Male, age 74, left hemisphere 35.7
1913 Female, age 42, unknown 35.3
1796 Male, age 53, unknown 35.1
2087 Female, age 72, unknown 34.5
2261 Male, age 18, unknown 34.4
1995 Male, age 72, unknown 33.9
1839 Male, age 51, unknown 33.8
2668 Female, age 75, unknown 33.8
2664 Male, age 75, both hemispheres 32.4
Ventral tegmental area
nTPM: 35.7
2410 Female, age 72, unknown 37.2
1915 Female, age 42, unknown 37.0
2218 Male, age 76, both hemispheres 36.8
2021 Male, age 53, unknown 34.6
2223 Female, age 72, unknown 34.6
1942 Male, age 51, unknown 34.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 39.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.5
Samples: 139

Max nTPM: 84.2
Min nTPM: 27.5
Std nTPM: 8.6
Median nTPM: 37.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 84.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 80.3
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 71.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 69.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 66.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 57.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 53.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 52.2
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 51.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 48.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 48.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 100.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 100.0
FF:10158-103A5 76 years, female 100.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 54.8
Pig sample Sample description nTPM
Midbrain
nTPM: 54.8
Samples: 4

Max nTPM: 72.1
Min nTPM: 48.6
Sample A Female 72.1
Sample B Female 48.6
Sample C Male 49.2
Sample D Male 49.1
Periaqueductal gray
nTPM: 46.2
Samples: 3

Max nTPM: 48.6
Min nTPM: 44.6
Sample B Female 45.3
Sample C Male 48.6
Sample D Male 44.6
Substantia nigra
nTPM: 51.8
Samples: 4

Max nTPM: 59.2
Min nTPM: 47.2
Sample A Female 59.2
Sample B Female 50.3
Sample C Male 50.5
Sample D Male 47.2
Superior colliculi
nTPM: 53.9
Samples: 4

Max nTPM: 59.8
Min nTPM: 50.9
Sample A Female 59.8
Sample B Female 52.7
Sample C Male 52.3
Sample D Male 50.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 53.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 53.0
Samples: 4

Max nTPM: 54.0
Min nTPM: 51.8
Sample A Male 52.9
Sample B Male 54.0
Sample C Female 53.3
Sample D Female 51.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
70565431 Antisense, RP_050623_04_H10, Mouse strain C57BL/6J (56 days, male) 0.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.