BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:20.0 nTPM
HPA:20.0 nTPM
GTEx:10.3 nTPM
FANTOM5:0.2 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA045114Antibody HPA050006
Glial cells Not detectedNot detected
Neuronal cells MediumNot detected





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 20.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 19.0
2481 Female, age 94, left hemisphere 20.8
2288 Male, age 75, left hemisphere 20.5
1857 Female, age 85, left hemisphere 19.8
1854 Male, age 80, left hemisphere 19.1
2290 Female, age 72, unknown 18.8
2846 Female, age 79, unknown 18.5
1781 Male, age 74, unknown 17.8
2289 Male, age 61, right hemisphere 17.1
Claustrum
nTPM: 18.1
2196 Female, age 79, unknown 22.3
1956 Male, age 74, unknown 19.3
2292 Female, age 85, both hemispheres 18.3
2392 Female, age 94, both hemispheres 18.3
2491 Male, age 75, both hemispheres 18.0
2198 Male, age 80, both hemispheres 17.6
2568 Male, age 61, both hemispheres 16.8
2284 Female, age 91, both hemispheres 16.7
2645 Female, age 72, unknown 15.8
Globus pallidus, externus
nTPM: 18.7
1996 Male, age 80, right hemisphere 21.0
2772 Female, age 79, unknown 21.0
2395 Male, age 75, both hemispheres 18.4
2567 Female, age 72, unknown 16.9
2646 Male, age 61, right hemisphere 16.3
Globus pallidus, internus
nTPM: 20.0
2287 Male, age 75, right hemisphere 22.1
2778 Female, age 91, both hemispheres 21.3
2483 Female, age 94, right hemisphere 21.1
1818 Male, age 74, unknown 20.0
2111 Female, age 85, right hemisphere 18.9
2037 Male, age 80, right hemisphere 18.7
2566 Female, age 72, unknown 18.0
Nucleus accumbens
nTPM: 19.2
1856 Female, age 91, right hemisphere 21.5
2698 Female, age 72, unknown 21.1
2286 Male, age 75, left hemisphere 19.3
1806 Female, age 85, left hemisphere 19.2
2732 Male, age 80, right hemisphere 18.7
2824 Male, age 61, right hemisphere 18.2
1783 Male, age 74, unknown 18.1
2391 Female, age 94, left hemisphere 17.8
Nucleus basalis of Meynert
nTPM: 18.2
2821 Male, age 75, both hemispheres 19.9
2393 Male, age 80, right hemisphere 18.3
2484 Female, age 94, left hemisphere 18.2
2569 Male, age 61, both hemispheres 16.5
Nucleus of the diagonal band
nTPM: 18.5
2775 Male, age 80, right hemisphere 19.1
1812 Female, age 91, both hemispheres 18.9
2195 Female, age 85, both hemispheres 18.9
1979 Male, age 74, unknown 18.0
2029 Male, age 61, right hemisphere 17.6
Olfactory tubercle
nTPM: 18.7
1846 Male, age 80, right hemisphere 20.2
2856 Male, age 75, right hemisphere 18.7
1998 Female, age 91, both hemispheres 18.0
2487 Female, age 94, left hemisphere 17.9
Putamen
nTPM: 18.8
2482 Female, age 94, left hemisphere 20.6
1937 Female, age 91, right hemisphere 19.9
1838 Male, age 80, right hemisphere 19.3
1829 Male, age 74, unknown 18.4
2466 Female, age 79, unknown 18.2
2647 Male, age 75, left hemisphere 18.0
2489 Female, age 72, unknown 17.2
Septal nuclei
nTPM: 18.4
2031 Female, age 72, unknown 19.7
1960 Male, age 74, unknown 19.6
2009 Female, age 91, both hemispheres 18.6
2199 Male, age 80, right hemisphere 18.2
2629 Female, age 94, right hemisphere 18.1
2059 Female, age 85, both hemispheres 17.6
2394 Male, age 61, left hemisphere 17.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 10.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 9.5
Samples: 246

Max nTPM: 20.1
Min nTPM: 2.3
Std nTPM: 3.6
Median nTPM: 9.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 20.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 19.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 19.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 18.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 18.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 18.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 18.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 17.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 16.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 16.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 16.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 9.8
Samples: 246

Max nTPM: 22.7
Min nTPM: 2.7
Std nTPM: 3.8
Median nTPM: 9.4
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 22.7
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 21.2
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 20.3
GTEX-ZE7O-0011-R6a-SM-57WCI 50-59 years, female 19.8
GTEX-1F48J-0011-R6a-SM-CJI2F 50-59 years, female 19.0
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 18.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 18.2
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 17.9
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 17.7
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 17.7
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 17.5
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Brain - Putamen (basal ganglia)
Average nTPM: 10.3
Samples: 205

Max nTPM: 21.8
Min nTPM: 2.0
Std nTPM: 3.9
Median nTPM: 9.9
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 21.8
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 21.6
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 20.7
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 20.3
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 19.8
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 19.8
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 18.3
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 18.1
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 17.4
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 17.2
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 16.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 0.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.0
FF:10164-103B2 76 years, female 0.0
Globus pallidus
Scaled Tags Per Million: 0.0
FF:10175-103C4 60 years, female 0.0
FF:10161-103A8 76 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 0.2
FF:10037-101F1 23-56 years, mixed 0.2
Putamen
Scaled Tags Per Million: 0.0
FF:10176-103C5 60 years, female 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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