BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:32.5 nTPM
HPA:32.5 nTPM
GTEx:25.8 nTPM
FANTOM5:32.7 Scaled Tags Per Million
Pig:18.9 nTPM
Mouse:12.5 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 32.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 18.2
2288 Male, age 75, left hemisphere 21.7
2481 Female, age 94, left hemisphere 19.3
1781 Male, age 74, unknown 18.5
2289 Male, age 61, right hemisphere 18.5
2290 Female, age 72, unknown 18.1
1854 Male, age 80, left hemisphere 17.2
2846 Female, age 79, unknown 16.9
1857 Female, age 85, left hemisphere 15.7
Claustrum
nTPM: 21.1
2292 Female, age 85, both hemispheres 27.2
2284 Female, age 91, both hemispheres 22.0
2491 Male, age 75, both hemispheres 21.7
2568 Male, age 61, both hemispheres 21.7
2645 Female, age 72, unknown 20.9
2392 Female, age 94, both hemispheres 19.8
1956 Male, age 74, unknown 19.5
2198 Male, age 80, both hemispheres 19.5
2196 Female, age 79, unknown 18.2
Globus pallidus, externus
nTPM: 32.5
2567 Female, age 72, unknown 46.7
1996 Male, age 80, right hemisphere 34.9
2646 Male, age 61, right hemisphere 34.0
2395 Male, age 75, both hemispheres 24.2
2772 Female, age 79, unknown 22.4
Globus pallidus, internus
nTPM: 31.5
2566 Female, age 72, unknown 40.4
2111 Female, age 85, right hemisphere 35.6
2778 Female, age 91, both hemispheres 30.7
2483 Female, age 94, right hemisphere 30.0
2287 Male, age 75, right hemisphere 29.0
2037 Male, age 80, right hemisphere 28.8
1818 Male, age 74, unknown 25.8
Nucleus accumbens
nTPM: 19.2
2732 Male, age 80, right hemisphere 27.1
2698 Female, age 72, unknown 21.2
2286 Male, age 75, left hemisphere 20.1
2391 Female, age 94, left hemisphere 19.6
1806 Female, age 85, left hemisphere 17.6
2824 Male, age 61, right hemisphere 17.3
1783 Male, age 74, unknown 16.7
1856 Female, age 91, right hemisphere 14.3
Nucleus basalis of Meynert
nTPM: 24.4
2569 Male, age 61, both hemispheres 38.2
2393 Male, age 80, right hemisphere 20.0
2484 Female, age 94, left hemisphere 19.8
2821 Male, age 75, both hemispheres 19.7
Nucleus of the diagonal band
nTPM: 19.9
2195 Female, age 85, both hemispheres 21.7
1979 Male, age 74, unknown 21.6
2775 Male, age 80, right hemisphere 20.9
2029 Male, age 61, right hemisphere 18.6
1812 Female, age 91, both hemispheres 16.5
Olfactory tubercle
nTPM: 19.3
2487 Female, age 94, left hemisphere 20.7
1846 Male, age 80, right hemisphere 20.1
1998 Female, age 91, both hemispheres 19.4
2856 Male, age 75, right hemisphere 17.2
Putamen
nTPM: 22.1
2647 Male, age 75, left hemisphere 34.2
2489 Female, age 72, unknown 28.3
2482 Female, age 94, left hemisphere 22.2
1829 Male, age 74, unknown 20.6
1937 Female, age 91, right hemisphere 18.3
2466 Female, age 79, unknown 17.4
1838 Male, age 80, right hemisphere 13.9
Septal nuclei
nTPM: 21.7
2394 Male, age 61, left hemisphere 25.3
2199 Male, age 80, right hemisphere 24.9
2059 Female, age 85, both hemispheres 23.9
1960 Male, age 74, unknown 21.2
2629 Female, age 94, right hemisphere 19.7
2009 Female, age 91, both hemispheres 19.0
2031 Female, age 72, unknown 17.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 25.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 19.6
Samples: 246

Max nTPM: 45.6
Min nTPM: 6.5
Std nTPM: 7.8
Median nTPM: 18.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 45.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 45.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 44.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 44.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 43.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 39.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 39.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 39.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 38.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 37.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 37.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 17.0
Samples: 246

Max nTPM: 44.7
Min nTPM: 6.2
Std nTPM: 7.5
Median nTPM: 15.5
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 44.7
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 38.7
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 37.6
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 37.3
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 37.0
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 36.5
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 36.2
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 35.5
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 35.4
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 35.2
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 35.1
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Brain - Putamen (basal ganglia)
Average nTPM: 25.8
Samples: 205

Max nTPM: 70.3
Min nTPM: 8.3
Std nTPM: 10.6
Median nTPM: 24.1
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 70.3
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 59.2
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 58.1
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 55.6
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 54.5
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 51.1
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 50.2
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 49.2
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 49.0
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 45.6
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 44.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 17.2
FF:10164-103B2 76 years, female 17.2
Globus pallidus
Scaled Tags Per Million: 32.7
FF:10161-103A8 76 years, female 42.6
FF:10175-103C4 60 years, female 22.8
Nucleus accumbens
Scaled Tags Per Million: 20.8
FF:10037-101F1 23-56 years, mixed 20.8
Putamen
Scaled Tags Per Million: 18.9
FF:10176-103C5 60 years, female 18.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 18.9
Pig sample Sample description nTPM
Caudate
nTPM: 14.1
Samples: 4

Max nTPM: 15.5
Min nTPM: 12.7
Sample A Female 13.2
Sample B Female 14.8
Sample C Male 15.5
Sample D Male 12.7
Putamen
nTPM: 14.9
Samples: 4

Max nTPM: 20.6
Min nTPM: 11.4
Sample A Female 20.6
Sample B Female 11.4
Sample C Male 12.9
Sample D Male 14.6
Septum
nTPM: 18.9
Samples: 4

Max nTPM: 24.3
Min nTPM: 16.4
Sample A Female 17.7
Sample B Female 17.1
Sample C Male 24.3
Sample D Male 16.4
Ventral pallidum
nTPM: 17.4
Samples: 4

Max nTPM: 24.7
Min nTPM: 12.9
Sample A Female 12.9
Sample B Female 16.0
Sample C Male 24.7
Sample D Male 15.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 12.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 9.4
Samples: 4

Max nTPM: 11.2
Min nTPM: 8.6
Sample A Male 8.7
Sample B Male 9.2
Sample C Female 11.2
Sample D Female 8.6
Septum
nTPM: 12.5
Samples: 4

Max nTPM: 13.7
Min nTPM: 10.2
Sample A Male 10.2
Sample B Male 13.7
Sample C Female 12.7
Sample D Female 13.3
Ventral forebrain
nTPM: 12.5
Samples: 4

Max nTPM: 13.5
Min nTPM: 11.3
Sample A Male 12.6
Sample B Male 12.4
Sample C Female 11.3
Sample D Female 13.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
69528034 Antisense, RP_050421_03_A02, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
69528034 Antisense, RP_050421_03_A02, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

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