BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:8.0 nTPM
HPA:8.0 nTPM
GTEx:8.2 nTPM
FANTOM5:23.2 Scaled Tags Per Million
Pig:7.4 nTPM
Mouse:4.9 nTPM

CAUDATE - Antibody stainingi
Antibody HPA030654
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 8.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 5.2
2288 Male, age 75, left hemisphere 6.9
2481 Female, age 94, left hemisphere 6.1
1857 Female, age 85, left hemisphere 5.2
2846 Female, age 79, unknown 5.2
2290 Female, age 72, unknown 5.0
1854 Male, age 80, left hemisphere 4.8
1781 Male, age 74, unknown 4.6
2289 Male, age 61, right hemisphere 3.8
Claustrum
nTPM: 4.7
2392 Female, age 94, both hemispheres 5.9
2491 Male, age 75, both hemispheres 5.5
1956 Male, age 74, unknown 4.9
2196 Female, age 79, unknown 4.7
2198 Male, age 80, both hemispheres 4.7
2284 Female, age 91, both hemispheres 4.4
2568 Male, age 61, both hemispheres 4.3
2645 Female, age 72, unknown 3.8
2292 Female, age 85, both hemispheres 3.7
Globus pallidus, externus
nTPM: 4.2
2395 Male, age 75, both hemispheres 5.6
2772 Female, age 79, unknown 4.4
1996 Male, age 80, right hemisphere 3.9
2567 Female, age 72, unknown 3.7
2646 Male, age 61, right hemisphere 3.5
Globus pallidus, internus
nTPM: 4.7
2287 Male, age 75, right hemisphere 7.0
2483 Female, age 94, right hemisphere 6.0
2778 Female, age 91, both hemispheres 4.9
2566 Female, age 72, unknown 4.2
1818 Male, age 74, unknown 3.8
2037 Male, age 80, right hemisphere 3.6
2111 Female, age 85, right hemisphere 3.3
Nucleus accumbens
nTPM: 5.5
2286 Male, age 75, left hemisphere 6.8
2391 Female, age 94, left hemisphere 6.1
1856 Female, age 91, right hemisphere 5.8
2698 Female, age 72, unknown 5.7
1806 Female, age 85, left hemisphere 5.3
2732 Male, age 80, right hemisphere 5.0
2824 Male, age 61, right hemisphere 4.9
1783 Male, age 74, unknown 4.7
Nucleus basalis of Meynert
nTPM: 4.7
2393 Male, age 80, right hemisphere 5.2
2821 Male, age 75, both hemispheres 5.2
2484 Female, age 94, left hemisphere 4.7
2569 Male, age 61, both hemispheres 3.5
Nucleus of the diagonal band
nTPM: 8.0
1979 Male, age 74, unknown 10.0
1812 Female, age 91, both hemispheres 8.1
2775 Male, age 80, right hemisphere 7.9
2195 Female, age 85, both hemispheres 7.6
2029 Male, age 61, right hemisphere 6.3
Olfactory tubercle
nTPM: 6.6
1846 Male, age 80, right hemisphere 7.8
2487 Female, age 94, left hemisphere 6.7
2856 Male, age 75, right hemisphere 6.1
1998 Female, age 91, both hemispheres 5.6
Putamen
nTPM: 5.1
2647 Male, age 75, left hemisphere 5.7
2482 Female, age 94, left hemisphere 5.6
1838 Male, age 80, right hemisphere 5.4
1937 Female, age 91, right hemisphere 5.4
1829 Male, age 74, unknown 5.2
2466 Female, age 79, unknown 4.7
2489 Female, age 72, unknown 3.8
Septal nuclei
nTPM: 6.6
1960 Male, age 74, unknown 7.6
2031 Female, age 72, unknown 7.5
2009 Female, age 91, both hemispheres 7.1
2199 Male, age 80, right hemisphere 7.1
2629 Female, age 94, right hemisphere 6.9
2059 Female, age 85, both hemispheres 5.9
2394 Male, age 61, left hemisphere 4.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 8.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 7.7
Samples: 246

Max nTPM: 16.5
Min nTPM: 3.6
Std nTPM: 1.7
Median nTPM: 7.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 16.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 14.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 13.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 13.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 12.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 11.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 11.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 11.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 11.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 11.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 10.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 8.2
Samples: 246

Max nTPM: 15.5
Min nTPM: 4.1
Std nTPM: 1.9
Median nTPM: 8.3
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 15.5
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 15.5
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 15.3
GTEX-1399T-0011-R6b-SM-5K7YL 60-69 years, male 13.8
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 13.3
GTEX-13FXS-0011-R6b-SM-5L3F7 50-59 years, male 13.0
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 12.1
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 11.8
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 11.8
GTEX-15DYW-0011-R6b-SM-6PALA 60-69 years, female 11.5
GTEX-ZE7O-0011-R6a-SM-57WCI 50-59 years, female 11.4
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Brain - Putamen (basal ganglia)
Average nTPM: 7.0
Samples: 205

Max nTPM: 14.4
Min nTPM: 2.5
Std nTPM: 1.7
Median nTPM: 6.7
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 14.4
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 14.1
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 12.7
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 11.4
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 11.3
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 10.9
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 10.1
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 9.4
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 9.3
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 9.3
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 9.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 17.4
FF:10164-103B2 76 years, female 17.4
Globus pallidus
Scaled Tags Per Million: 17.3
FF:10175-103C4 60 years, female 20.5
FF:10161-103A8 76 years, female 14.2
Nucleus accumbens
Scaled Tags Per Million: 13.2
FF:10037-101F1 23-56 years, mixed 13.2
Putamen
Scaled Tags Per Million: 23.2
FF:10176-103C5 60 years, female 23.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 7.4
Pig sample Sample description nTPM
Caudate
nTPM: 5.8
Samples: 4

Max nTPM: 6.5
Min nTPM: 5.3
Sample A Female 6.5
Sample B Female 5.3
Sample C Male 5.4
Sample D Male 6.1
Putamen
nTPM: 6.3
Samples: 4

Max nTPM: 8.8
Min nTPM: 5.3
Sample A Female 5.4
Sample B Female 5.5
Sample C Male 8.8
Sample D Male 5.3
Septum
nTPM: 7.4
Samples: 4

Max nTPM: 8.7
Min nTPM: 6.7
Sample A Female 7.1
Sample B Female 6.7
Sample C Male 8.7
Sample D Male 7.1
Ventral pallidum
nTPM: 6.0
Samples: 4

Max nTPM: 7.5
Min nTPM: 5.0
Sample A Female 7.5
Sample B Female 5.6
Sample C Male 5.8
Sample D Male 5.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 4.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 3.0
Samples: 4

Max nTPM: 3.5
Min nTPM: 2.6
Sample A Male 3.0
Sample B Male 2.6
Sample C Female 3.5
Sample D Female 2.8
Septum
nTPM: 4.9
Samples: 4

Max nTPM: 5.6
Min nTPM: 4.5
Sample A Male 4.5
Sample B Male 5.6
Sample C Female 4.8
Sample D Female 4.7
Ventral forebrain
nTPM: 3.6
Samples: 4

Max nTPM: 4.2
Min nTPM: 2.8
Sample A Male 4.2
Sample B Male 3.5
Sample C Female 2.8
Sample D Female 3.7

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