BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:23.1 nTPM
HPA:23.1 nTPM
GTEx:29.0 nTPM
FANTOM5:125.3 Scaled Tags Per Million
Pig:26.2 nTPM
Mouse:66.3 nTPM
Allen mouse:4.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 23.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 17.8
1857 Female, age 85, left hemisphere 29.7
2290 Female, age 72, unknown 24.5
1854 Male, age 80, left hemisphere 23.5
2846 Female, age 79, unknown 19.8
2289 Male, age 61, right hemisphere 14.9
1781 Male, age 74, unknown 12.2
2288 Male, age 75, left hemisphere 11.4
2481 Female, age 94, left hemisphere 6.0
Claustrum
nTPM: 7.7
2196 Female, age 79, unknown 10.3
2292 Female, age 85, both hemispheres 10.0
2568 Male, age 61, both hemispheres 9.4
2198 Male, age 80, both hemispheres 8.9
2284 Female, age 91, both hemispheres 8.9
2392 Female, age 94, both hemispheres 7.4
2491 Male, age 75, both hemispheres 6.2
2645 Female, age 72, unknown 4.7
1956 Male, age 74, unknown 3.4
Globus pallidus, externus
nTPM: 0.9
2646 Male, age 61, right hemisphere 2.1
2395 Male, age 75, both hemispheres 1.5
1996 Male, age 80, right hemisphere 0.5
2567 Female, age 72, unknown 0.4
2772 Female, age 79, unknown 0.2
Globus pallidus, internus
nTPM: 0.8
2483 Female, age 94, right hemisphere 3.1
2566 Female, age 72, unknown 2.6
2111 Female, age 85, right hemisphere 0.2
2287 Male, age 75, right hemisphere 0.2
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 23.1
1856 Female, age 91, right hemisphere 41.2
2824 Male, age 61, right hemisphere 33.1
1806 Female, age 85, left hemisphere 29.7
1783 Male, age 74, unknown 29.3
2698 Female, age 72, unknown 25.7
2286 Male, age 75, left hemisphere 11.6
2732 Male, age 80, right hemisphere 9.3
2391 Female, age 94, left hemisphere 5.3
Nucleus basalis of Meynert
nTPM: 11.3
2393 Male, age 80, right hemisphere 20.8
2484 Female, age 94, left hemisphere 14.0
2821 Male, age 75, both hemispheres 7.8
2569 Male, age 61, both hemispheres 2.4
Nucleus of the diagonal band
nTPM: 4.0
1979 Male, age 74, unknown 9.5
2775 Male, age 80, right hemisphere 4.1
1812 Female, age 91, both hemispheres 3.1
2195 Female, age 85, both hemispheres 2.2
2029 Male, age 61, right hemisphere 1.3
Olfactory tubercle
nTPM: 3.9
1998 Female, age 91, both hemispheres 5.4
1846 Male, age 80, right hemisphere 4.8
2487 Female, age 94, left hemisphere 3.0
2856 Male, age 75, right hemisphere 2.5
Putamen
nTPM: 15.7
1838 Male, age 80, right hemisphere 32.2
1937 Female, age 91, right hemisphere 24.5
2466 Female, age 79, unknown 17.5
1829 Male, age 74, unknown 13.5
2489 Female, age 72, unknown 9.1
2482 Female, age 94, left hemisphere 8.1
2647 Male, age 75, left hemisphere 4.9
Septal nuclei
nTPM: 4.2
2394 Male, age 61, left hemisphere 8.6
2059 Female, age 85, both hemispheres 5.0
2009 Female, age 91, both hemispheres 4.1
1960 Male, age 74, unknown 3.6
2199 Male, age 80, right hemisphere 3.6
2031 Female, age 72, unknown 2.3
2629 Female, age 94, right hemisphere 1.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 29.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 14.2
Samples: 246

Max nTPM: 57.4
Min nTPM: 0.1
Std nTPM: 11.7
Median nTPM: 12.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 57.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 57.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 50.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 47.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 46.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 45.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 43.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 43.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 42.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 39.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 39.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 29.0
Samples: 246

Max nTPM: 104.1
Min nTPM: 0.2
Std nTPM: 21.1
Median nTPM: 26.7
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 104.1
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 96.2
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 91.2
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 80.6
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 78.7
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 75.6
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 74.8
GTEX-14JIY-0011-R6b-SM-68714 60-69 years, male 72.6
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 72.1
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 72.1
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 70.6
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Brain - Putamen (basal ganglia)
Average nTPM: 11.7
Samples: 205

Max nTPM: 65.4
Min nTPM: 0.0
Std nTPM: 12.2
Median nTPM: 7.2
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 65.4
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 64.4
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 57.9
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 50.5
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 46.3
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 40.6
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 37.1
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 35.2
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 35.1
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 34.9
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 34.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 125.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 64.1
FF:10164-103B2 76 years, female 64.1
Globus pallidus
Scaled Tags Per Million: 17.1
FF:10175-103C4 60 years, female 32.3
FF:10161-103A8 76 years, female 1.9
Nucleus accumbens
Scaled Tags Per Million: 56.6
FF:10037-101F1 23-56 years, mixed 56.6
Putamen
Scaled Tags Per Million: 125.3
FF:10176-103C5 60 years, female 125.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 26.2
Pig sample Sample description nTPM
Caudate
nTPM: 19.1
Samples: 4

Max nTPM: 21.3
Min nTPM: 16.6
Sample A Female 21.3
Sample B Female 19.3
Sample C Male 16.6
Sample D Male 19.1
Putamen
nTPM: 18.9
Samples: 4

Max nTPM: 23.4
Min nTPM: 15.0
Sample A Female 15.0
Sample B Female 22.0
Sample C Male 23.4
Sample D Male 15.0
Septum
nTPM: 26.2
Samples: 4

Max nTPM: 36.8
Min nTPM: 16.2
Sample A Female 36.8
Sample B Female 27.8
Sample C Male 24.0
Sample D Male 16.2
Ventral pallidum
nTPM: 20.4
Samples: 4

Max nTPM: 29.9
Min nTPM: 14.5
Sample A Female 29.9
Sample B Female 21.6
Sample C Male 15.6
Sample D Male 14.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 66.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 41.0
Samples: 4

Max nTPM: 44.3
Min nTPM: 33.0
Sample A Male 43.2
Sample B Male 33.0
Sample C Female 44.3
Sample D Female 43.5
Septum
nTPM: 60.6
Samples: 4

Max nTPM: 67.3
Min nTPM: 56.6
Sample A Male 56.6
Sample B Male 58.7
Sample C Female 67.3
Sample D Female 59.9
Ventral forebrain
nTPM: 66.3
Samples: 4

Max nTPM: 75.4
Min nTPM: 60.8
Sample A Male 67.4
Sample B Male 61.4
Sample C Female 60.8
Sample D Female 75.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.2
71393424 Antisense, RP_050825_02_B06, Mouse strain C57BL/6J (56 days, male) 3.2
73636098 Antisense, RP_050825_02_B06, Mouse strain C57BL/6J (56 days, male) 2.4
Pallidum
Expression energy: 4.2
71393424 Antisense, RP_050825_02_B06, Mouse strain C57BL/6J (56 days, male) 4.2
73636098 Antisense, RP_050825_02_B06, Mouse strain C57BL/6J (56 days, male) 2.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.