MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:75.8 nTPM
HPA:75.8 nTPM
GTEx:68.2 nTPM
FANTOM5:16.9 Scaled Tags Per Million
Pig:75.4 nTPM
Mouse:54.9 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 75.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 56.9
1827 Male, age 72, unknown 59.1
2019 Male, age 18, unknown 59.0
2411 Female, age 72, unknown 57.1
1870 Female, age 42, unknown 57.0
2828 Female, age 72, unknown 57.0
1833 Male, age 53, unknown 56.7
1830 Male, age 51, unknown 56.0
2586 Male, age 75, left hemisphere 55.7
2666 Male, age 74, left hemisphere 55.5
2219 Male, age 76, both hemispheres 55.4
Dorsal raphe nucleus
nTPM: 65.9
2298 Female, age 72, unknown 78.0
2016 Female, age 72, unknown 71.0
1828 Male, age 53, unknown 62.9
2047 Male, age 72, unknown 60.7
2750 Male, age 76, both hemispheres 57.0
Inferior colliculus
nTPM: 58.4
2097 Female, age 72, unknown 60.3
2849 Male, age 72, unknown 58.6
1890 Male, age 53, unknown 57.6
1848 Female, age 42, unknown 57.2
Median raphe nucleus
nTPM: 61.3
2220 Male, age 76, midline 61.3
Pedunculopontine tegmental nucleus
nTPM: 58.4
2338 Male, age 61, both hemispheres 59.3
2334 Male, age 80, both hemispheres 58.5
1921 Female, age 85, both hemispheres 57.5
Periaquaductal grey, anterior
nTPM: 62.5
1795 Male, age 51, unknown 65.4
1947 Male, age 18, unknown 61.8
2502 Female, age 75, unknown 60.3
Periaquaductal grey, dorsal
nTPM: 67.8
2850 Male, age 76, both hemispheres 80.2
1840 Male, age 53, unknown 67.3
1831 Male, age 72, unknown 62.5
2464 Female, age 72, unknown 61.2
Periaquaductal grey, lateral
nTPM: 75.8
2272 Male, age 74, both hemispheres 94.2
2140 Male, age 76, both hemispheres 72.7
2053 Male, age 18, unknown 60.6
Pretectal area
nTPM: 63.6
2273 Male, age 74, both hemispheres 88.5
2224 Female, age 72, unknown 68.7
2667 Female, age 75, unknown 61.9
1816 Male, age 51, unknown 61.8
1817 Female, age 42, unknown 61.6
1815 Male, age 53, unknown 61.5
2825 Male, age 18, unknown 61.2
1944 Female, age 72, unknown 60.7
2007 Male, age 72, unknown 59.6
2407 Male, age 75, both hemispheres 57.5
2316 Male, age 76, right hemisphere 56.5
Red nucleus
nTPM: 56.6
2725 Female, age 75, unknown 59.8
2785 Male, age 18, unknown 59.5
2769 Male, age 72, unknown 57.2
2227 Male, age 72, unknown 57.0
2503 Female, age 72, unknown 56.8
1954 Female, age 42, unknown 56.7
1821 Female, age 72, unknown 56.5
1865 Male, age 51, unknown 56.5
1904 Male, age 53, unknown 55.9
2823 Male, age 76, right hemisphere 54.8
2588 Male, age 74, left hemisphere 54.5
2584 Male, age 75, left hemisphere 54.4
Substantia nigra
nTPM: 58.7
1941 Male, age 53, unknown 60.4
2699 Male, age 18, unknown 60.1
2590 Female, age 75, unknown 60.0
1916 Female, age 42, unknown 59.8
1889 Female, age 72, unknown 59.7
1851 Male, age 51, unknown 59.1
2241 Male, age 72, unknown 58.5
2409 Female, age 72, unknown 57.4
2665 Male, age 74, both hemispheres 56.2
2583 Male, age 75, right hemisphere 55.9
Superior colliculus
nTPM: 59.9
2587 Male, age 74, left hemisphere 65.4
1995 Male, age 72, unknown 64.5
2261 Male, age 18, unknown 61.6
2087 Female, age 72, unknown 59.8
2664 Male, age 75, both hemispheres 59.1
1796 Male, age 53, unknown 59.0
1839 Male, age 51, unknown 58.2
1913 Female, age 42, unknown 58.2
2668 Female, age 75, unknown 56.9
1895 Male, age 76, right hemisphere 56.0
Ventral tegmental area
nTPM: 59.2
2021 Male, age 53, unknown 61.3
1915 Female, age 42, unknown 60.2
1942 Male, age 51, unknown 59.3
2218 Male, age 76, both hemispheres 58.6
2223 Female, age 72, unknown 58.2
2410 Female, age 72, unknown 57.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 68.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 68.2
Samples: 139

Max nTPM: 188.7
Min nTPM: 18.8
Std nTPM: 22.1
Median nTPM: 63.5
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 188.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 134.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 130.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 123.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 122.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 111.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 107.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 106.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 99.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 96.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 94.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.9
FF:10158-103A5 76 years, female 16.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 75.4
Pig sample Sample description nTPM
Midbrain
nTPM: 49.4
Samples: 4

Max nTPM: 69.4
Min nTPM: 37.3
Sample A Female 69.4
Sample B Female 50.5
Sample C Male 37.3
Sample D Male 40.3
Periaqueductal gray
nTPM: 75.4
Samples: 3

Max nTPM: 87.7
Min nTPM: 60.7
Sample B Female 60.7
Sample C Male 77.7
Sample D Male 87.7
Substantia nigra
nTPM: 40.1
Samples: 4

Max nTPM: 50.3
Min nTPM: 35.1
Sample A Female 50.3
Sample B Female 36.4
Sample C Male 38.5
Sample D Male 35.1
Superior colliculi
nTPM: 48.1
Samples: 4

Max nTPM: 54.3
Min nTPM: 43.3
Sample A Female 54.3
Sample B Female 51.0
Sample C Male 43.3
Sample D Male 43.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 54.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 54.9
Samples: 4

Max nTPM: 56.5
Min nTPM: 51.3
Sample A Male 55.6
Sample B Male 56.5
Sample C Female 51.3
Sample D Female 56.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
69838701 Antisense, RP_050317_04_F04, Mouse strain C57BL/6J (56 days, male) 0.8
77910681 Antisense, RP_070208_04_E11, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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