MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1395.4 nTPM
HPA:1395.4 nTPM
GTEx:1621.3 nTPM
FANTOM5:47.1 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1395.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1363.9
1870 Female, age 42, unknown 1412.1
2411 Female, age 72, unknown 1405.3
2828 Female, age 72, unknown 1380.6
2586 Male, age 75, left hemisphere 1376.5
2666 Male, age 74, left hemisphere 1364.3
2019 Male, age 18, unknown 1356.9
1830 Male, age 51, unknown 1352.0
1833 Male, age 53, unknown 1350.1
1827 Male, age 72, unknown 1344.2
2219 Male, age 76, both hemispheres 1297.5
Dorsal raphe nucleus
nTPM: 1382.5
2298 Female, age 72, unknown 1438.7
2750 Male, age 76, both hemispheres 1383.2
2016 Female, age 72, unknown 1382.6
1828 Male, age 53, unknown 1363.3
2047 Male, age 72, unknown 1344.8
Inferior colliculus
nTPM: 1360.8
2097 Female, age 72, unknown 1390.9
1890 Male, age 53, unknown 1371.6
1848 Female, age 42, unknown 1344.3
2849 Male, age 72, unknown 1336.4
Median raphe nucleus
nTPM: 1358.0
2220 Male, age 76, midline 1358.0
Pedunculopontine tegmental nucleus
nTPM: 1384.5
2338 Male, age 61, both hemispheres 1414.4
2334 Male, age 80, both hemispheres 1401.0
1921 Female, age 85, both hemispheres 1338.0
Periaquaductal grey, anterior
nTPM: 1381.8
2502 Female, age 75, unknown 1418.2
1947 Male, age 18, unknown 1368.3
1795 Male, age 51, unknown 1359.0
Periaquaductal grey, dorsal
nTPM: 1350.7
1831 Male, age 72, unknown 1365.7
1840 Male, age 53, unknown 1363.4
2464 Female, age 72, unknown 1355.0
2850 Male, age 76, both hemispheres 1318.6
Periaquaductal grey, lateral
nTPM: 1346.1
2053 Male, age 18, unknown 1376.8
2140 Male, age 76, both hemispheres 1336.2
2272 Male, age 74, both hemispheres 1325.3
Pretectal area
nTPM: 1343.4
2316 Male, age 76, right hemisphere 1381.3
2224 Female, age 72, unknown 1375.0
2825 Male, age 18, unknown 1363.1
2007 Male, age 72, unknown 1348.2
1817 Female, age 42, unknown 1343.8
1815 Male, age 53, unknown 1340.7
2273 Male, age 74, both hemispheres 1337.5
2667 Female, age 75, unknown 1327.2
1816 Male, age 51, unknown 1326.6
2407 Male, age 75, both hemispheres 1326.0
1944 Female, age 72, unknown 1308.2
Red nucleus
nTPM: 1395.4
2503 Female, age 72, unknown 1457.6
1821 Female, age 72, unknown 1422.7
2769 Male, age 72, unknown 1416.3
1865 Male, age 51, unknown 1414.3
1904 Male, age 53, unknown 1411.1
2227 Male, age 72, unknown 1407.1
2588 Male, age 74, left hemisphere 1382.1
2584 Male, age 75, left hemisphere 1375.5
2725 Female, age 75, unknown 1374.5
1954 Female, age 42, unknown 1370.7
2785 Male, age 18, unknown 1367.6
2823 Male, age 76, right hemisphere 1345.6
Substantia nigra
nTPM: 1377.7
1851 Male, age 51, unknown 1437.1
2665 Male, age 74, both hemispheres 1423.9
2699 Male, age 18, unknown 1394.9
2590 Female, age 75, unknown 1388.2
1916 Female, age 42, unknown 1373.7
2409 Female, age 72, unknown 1367.4
1889 Female, age 72, unknown 1360.4
2241 Male, age 72, unknown 1352.2
2583 Male, age 75, right hemisphere 1339.9
1941 Male, age 53, unknown 1339.4
Superior colliculus
nTPM: 1369.4
1995 Male, age 72, unknown 1423.7
2587 Male, age 74, left hemisphere 1410.6
1913 Female, age 42, unknown 1399.1
1796 Male, age 53, unknown 1376.1
2664 Male, age 75, both hemispheres 1360.3
1839 Male, age 51, unknown 1359.9
2668 Female, age 75, unknown 1358.1
1895 Male, age 76, right hemisphere 1341.2
2261 Male, age 18, unknown 1337.2
2087 Female, age 72, unknown 1327.3
Ventral tegmental area
nTPM: 1393.4
1915 Female, age 42, unknown 1423.9
2021 Male, age 53, unknown 1413.2
2410 Female, age 72, unknown 1402.4
2223 Female, age 72, unknown 1398.0
1942 Male, age 51, unknown 1377.9
2218 Male, age 76, both hemispheres 1345.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1621.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1621.3
Samples: 139

Max nTPM: 3825.7
Min nTPM: 631.8
Std nTPM: 556.1
Median nTPM: 1533.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 3825.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 3619.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 3236.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 3097.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 2707.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 2696.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2614.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 2590.9
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 2590.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 2558.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 2543.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 47.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 47.1
FF:10158-103A5 76 years, female 47.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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