BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:111.2 nTPM
HPA:111.2 nTPM
GTEx:99.2 nTPM
FANTOM5:243.4 Scaled Tags Per Million
Pig:147.3 nTPM
Mouse:545.3 nTPM
Allen mouse:10.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA008147
Glial cells Not detected
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 111.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 61.8
1781 Male, age 74, unknown 76.3
2288 Male, age 75, left hemisphere 69.9
2846 Female, age 79, unknown 69.0
2481 Female, age 94, left hemisphere 63.5
1857 Female, age 85, left hemisphere 59.3
1854 Male, age 80, left hemisphere 57.7
2290 Female, age 72, unknown 54.5
2289 Male, age 61, right hemisphere 44.3
Claustrum
nTPM: 82.3
2198 Male, age 80, both hemispheres 100.6
2392 Female, age 94, both hemispheres 91.7
2491 Male, age 75, both hemispheres 90.0
2284 Female, age 91, both hemispheres 83.1
1956 Male, age 74, unknown 82.1
2196 Female, age 79, unknown 77.4
2568 Male, age 61, both hemispheres 76.1
2645 Female, age 72, unknown 70.0
2292 Female, age 85, both hemispheres 69.4
Globus pallidus, externus
nTPM: 56.7
2395 Male, age 75, both hemispheres 90.7
2772 Female, age 79, unknown 78.8
1996 Male, age 80, right hemisphere 44.5
2567 Female, age 72, unknown 35.6
2646 Male, age 61, right hemisphere 33.9
Globus pallidus, internus
nTPM: 51.2
2287 Male, age 75, right hemisphere 69.0
1818 Male, age 74, unknown 61.5
2483 Female, age 94, right hemisphere 55.6
2778 Female, age 91, both hemispheres 48.0
2037 Male, age 80, right hemisphere 45.3
2566 Female, age 72, unknown 41.8
2111 Female, age 85, right hemisphere 37.2
Nucleus accumbens
nTPM: 68.2
1856 Female, age 91, right hemisphere 94.0
1783 Male, age 74, unknown 73.4
2286 Male, age 75, left hemisphere 71.6
2824 Male, age 61, right hemisphere 69.2
2698 Female, age 72, unknown 63.7
1806 Female, age 85, left hemisphere 62.0
2391 Female, age 94, left hemisphere 59.9
2732 Male, age 80, right hemisphere 51.8
Nucleus basalis of Meynert
nTPM: 54.3
2821 Male, age 75, both hemispheres 70.9
2484 Female, age 94, left hemisphere 58.9
2393 Male, age 80, right hemisphere 55.6
2569 Male, age 61, both hemispheres 31.8
Nucleus of the diagonal band
nTPM: 109.8
1812 Female, age 91, both hemispheres 144.9
2775 Male, age 80, right hemisphere 135.5
2195 Female, age 85, both hemispheres 102.7
2029 Male, age 61, right hemisphere 98.1
1979 Male, age 74, unknown 68.1
Olfactory tubercle
nTPM: 111.2
1998 Female, age 91, both hemispheres 137.2
2487 Female, age 94, left hemisphere 120.2
1846 Male, age 80, right hemisphere 111.0
2856 Male, age 75, right hemisphere 76.5
Putamen
nTPM: 60.3
1937 Female, age 91, right hemisphere 74.1
2466 Female, age 79, unknown 72.8
1838 Male, age 80, right hemisphere 66.7
2482 Female, age 94, left hemisphere 66.6
1829 Male, age 74, unknown 55.0
2647 Male, age 75, left hemisphere 50.1
2489 Female, age 72, unknown 36.9
Septal nuclei
nTPM: 95.8
2031 Female, age 72, unknown 135.5
1960 Male, age 74, unknown 126.1
2009 Female, age 91, both hemispheres 114.1
2629 Female, age 94, right hemisphere 105.8
2059 Female, age 85, both hemispheres 76.6
2394 Male, age 61, left hemisphere 59.6
2199 Male, age 80, right hemisphere 52.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 99.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 72.2
Samples: 246

Max nTPM: 266.1
Min nTPM: 28.1
Std nTPM: 27.1
Median nTPM: 70.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 266.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 162.7
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 148.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 147.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 139.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 135.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 128.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 118.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 115.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 115.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 114.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 99.2
Samples: 246

Max nTPM: 192.0
Min nTPM: 27.0
Std nTPM: 37.7
Median nTPM: 101.3
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 192.0
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 188.2
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 179.0
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 178.4
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 174.0
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 173.5
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 173.4
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 172.1
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 171.3
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 166.1
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 164.2
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Brain - Putamen (basal ganglia)
Average nTPM: 69.3
Samples: 205

Max nTPM: 144.5
Min nTPM: 27.0
Std nTPM: 23.8
Median nTPM: 68.2
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 144.5
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 133.0
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 123.8
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 122.6
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 120.2
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 116.4
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 113.6
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 111.7
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 111.5
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 111.2
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 110.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 243.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 140.8
FF:10164-103B2 76 years, female 140.8
Globus pallidus
Scaled Tags Per Million: 90.5
FF:10175-103C4 60 years, female 107.3
FF:10161-103A8 76 years, female 73.7
Nucleus accumbens
Scaled Tags Per Million: 243.4
FF:10037-101F1 23-56 years, mixed 243.4
Putamen
Scaled Tags Per Million: 195.3
FF:10176-103C5 60 years, female 195.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 147.3
Pig sample Sample description nTPM
Caudate
nTPM: 147.3
Samples: 4

Max nTPM: 166.8
Min nTPM: 131.9
Sample A Female 131.9
Sample B Female 154.4
Sample C Male 166.8
Sample D Male 136.1
Putamen
nTPM: 146.6
Samples: 4

Max nTPM: 196.5
Min nTPM: 106.8
Sample A Female 106.8
Sample B Female 134.3
Sample C Male 196.5
Sample D Male 148.9
Septum
nTPM: 145.1
Samples: 4

Max nTPM: 189.9
Min nTPM: 111.3
Sample A Female 144.8
Sample B Female 134.2
Sample C Male 189.9
Sample D Male 111.3
Ventral pallidum
nTPM: 139.5
Samples: 4

Max nTPM: 166.2
Min nTPM: 124.3
Sample A Female 139.6
Sample B Female 127.9
Sample C Male 166.2
Sample D Male 124.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 545.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 433.6
Samples: 4

Max nTPM: 453.3
Min nTPM: 415.9
Sample A Male 422.0
Sample B Male 415.9
Sample C Female 443.1
Sample D Female 453.3
Septum
nTPM: 541.5
Samples: 4

Max nTPM: 586.8
Min nTPM: 468.2
Sample A Male 586.8
Sample B Male 558.1
Sample C Female 552.8
Sample D Female 468.2
Ventral forebrain
nTPM: 545.3
Samples: 4

Max nTPM: 579.9
Min nTPM: 513.4
Sample A Male 513.4
Sample B Male 549.5
Sample C Female 579.9
Sample D Female 538.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 10.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 7.3
129 Antisense, RP_040315_01_14, Mouse strain C57BL/6J (56 days, male) 7.3
130 Antisense, RP_040315_01_14, Mouse strain C57BL/6J (56 days, male) 6.8
Pallidum
Expression energy: 10.2
129 Antisense, RP_040315_01_14, Mouse strain C57BL/6J (56 days, male) 10.2
130 Antisense, RP_040315_01_14, Mouse strain C57BL/6J (56 days, male) 8.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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