MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:83.6 nTPM
HPA:83.6 nTPM
GTEx:104.0 nTPM
FANTOM5:147.5 Scaled Tags Per Million
Pig:191.5 nTPM
Mouse:168.0 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 83.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 74.2
1833 Male, age 53, unknown 80.8
1870 Female, age 42, unknown 80.3
2411 Female, age 72, unknown 79.4
1830 Male, age 51, unknown 79.2
2019 Male, age 18, unknown 75.9
2828 Female, age 72, unknown 74.0
2666 Male, age 74, left hemisphere 70.8
1827 Male, age 72, unknown 69.7
2586 Male, age 75, left hemisphere 66.6
2219 Male, age 76, both hemispheres 65.4
Dorsal raphe nucleus
nTPM: 69.8
2750 Male, age 76, both hemispheres 78.8
2016 Female, age 72, unknown 71.5
1828 Male, age 53, unknown 69.9
2298 Female, age 72, unknown 64.8
2047 Male, age 72, unknown 63.8
Inferior colliculus
nTPM: 67.5
2097 Female, age 72, unknown 69.5
1848 Female, age 42, unknown 67.9
1890 Male, age 53, unknown 66.5
2849 Male, age 72, unknown 66.1
Median raphe nucleus
nTPM: 65.4
2220 Male, age 76, midline 65.4
Pedunculopontine tegmental nucleus
nTPM: 74.0
2334 Male, age 80, both hemispheres 78.3
1921 Female, age 85, both hemispheres 75.3
2338 Male, age 61, both hemispheres 68.5
Periaquaductal grey, anterior
nTPM: 69.4
2502 Female, age 75, unknown 74.3
1947 Male, age 18, unknown 69.5
1795 Male, age 51, unknown 64.2
Periaquaductal grey, dorsal
nTPM: 66.4
2464 Female, age 72, unknown 71.2
2850 Male, age 76, both hemispheres 66.0
1831 Male, age 72, unknown 65.2
1840 Male, age 53, unknown 63.3
Periaquaductal grey, lateral
nTPM: 67.2
2053 Male, age 18, unknown 72.5
2272 Male, age 74, both hemispheres 65.6
2140 Male, age 76, both hemispheres 63.6
Pretectal area
nTPM: 70.0
2316 Male, age 76, right hemisphere 76.4
1815 Male, age 53, unknown 75.2
1817 Female, age 42, unknown 75.2
2407 Male, age 75, both hemispheres 70.5
2825 Male, age 18, unknown 69.9
2007 Male, age 72, unknown 69.6
2667 Female, age 75, unknown 69.1
2224 Female, age 72, unknown 68.2
2273 Male, age 74, both hemispheres 67.1
1816 Male, age 51, unknown 65.0
1944 Female, age 72, unknown 64.3
Red nucleus
nTPM: 83.6
1821 Female, age 72, unknown 92.6
1904 Male, age 53, unknown 92.4
1865 Male, age 51, unknown 88.7
2503 Female, age 72, unknown 88.2
2823 Male, age 76, right hemisphere 87.8
2769 Male, age 72, unknown 85.1
2227 Male, age 72, unknown 82.9
1954 Female, age 42, unknown 82.3
2725 Female, age 75, unknown 77.6
2588 Male, age 74, left hemisphere 77.1
2785 Male, age 18, unknown 76.7
2584 Male, age 75, left hemisphere 72.2
Substantia nigra
nTPM: 71.4
1851 Male, age 51, unknown 76.6
1889 Female, age 72, unknown 75.8
2241 Male, age 72, unknown 75.7
2409 Female, age 72, unknown 74.3
2699 Male, age 18, unknown 73.5
2590 Female, age 75, unknown 70.5
2665 Male, age 74, both hemispheres 69.7
1916 Female, age 42, unknown 68.7
1941 Male, age 53, unknown 65.5
2583 Male, age 75, right hemisphere 63.2
Superior colliculus
nTPM: 73.9
1995 Male, age 72, unknown 83.0
1895 Male, age 76, right hemisphere 82.5
1913 Female, age 42, unknown 81.6
2587 Male, age 74, left hemisphere 78.4
2668 Female, age 75, unknown 73.2
1839 Male, age 51, unknown 72.9
1796 Male, age 53, unknown 69.6
2261 Male, age 18, unknown 67.3
2087 Female, age 72, unknown 65.8
2664 Male, age 75, both hemispheres 64.7
Ventral tegmental area
nTPM: 71.0
2410 Female, age 72, unknown 76.5
2223 Female, age 72, unknown 73.3
1915 Female, age 42, unknown 70.9
1942 Male, age 51, unknown 69.1
2218 Male, age 76, both hemispheres 68.3
2021 Male, age 53, unknown 68.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 104.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 104.0
Samples: 139

Max nTPM: 215.5
Min nTPM: 47.2
Std nTPM: 33.1
Median nTPM: 99.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 215.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 211.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 200.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 190.5
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 188.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 183.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 181.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 172.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 163.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 158.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 156.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 147.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 147.5
FF:10158-103A5 76 years, female 147.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 191.5
Pig sample Sample description nTPM
Midbrain
nTPM: 191.5
Samples: 4

Max nTPM: 430.0
Min nTPM: 93.5
Sample A Female 430.0
Sample B Female 146.8
Sample C Male 95.7
Sample D Male 93.5
Periaqueductal gray
nTPM: 115.5
Samples: 3

Max nTPM: 126.0
Min nTPM: 95.4
Sample B Female 126.0
Sample C Male 95.4
Sample D Male 125.1
Substantia nigra
nTPM: 158.9
Samples: 4

Max nTPM: 238.3
Min nTPM: 94.1
Sample A Female 176.2
Sample B Female 94.1
Sample C Male 126.8
Sample D Male 238.3
Superior colliculi
nTPM: 136.5
Samples: 4

Max nTPM: 162.7
Min nTPM: 82.9
Sample A Female 162.7
Sample B Female 82.9
Sample C Male 140.0
Sample D Male 160.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 168.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 168.0
Samples: 4

Max nTPM: 180.2
Min nTPM: 160.5
Sample A Male 164.5
Sample B Male 160.5
Sample C Female 166.8
Sample D Female 180.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
77910717 Antisense, RP_070208_04_F04, Mouse strain C57BL/6J (56 days, male) 1.2
68321904 Antisense, RP_041207_01_A07, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.