MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:243.1 nTPM
HPA:243.1 nTPM
GTEx:310.2 nTPM
FANTOM5:678.6 Scaled Tags Per Million
Pig:104.6 nTPM
Mouse:0.1 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 243.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 185.5
1870 Female, age 42, unknown 213.6
2828 Female, age 72, unknown 206.2
2586 Male, age 75, left hemisphere 192.4
2666 Male, age 74, left hemisphere 188.7
1833 Male, age 53, unknown 187.4
2019 Male, age 18, unknown 183.1
2411 Female, age 72, unknown 179.7
1830 Male, age 51, unknown 179.2
1827 Male, age 72, unknown 174.2
2219 Male, age 76, both hemispheres 150.4
Dorsal raphe nucleus
nTPM: 221.0
2016 Female, age 72, unknown 266.3
1828 Male, age 53, unknown 239.0
2047 Male, age 72, unknown 211.7
2298 Female, age 72, unknown 204.7
2750 Male, age 76, both hemispheres 183.1
Inferior colliculus
nTPM: 237.4
1848 Female, age 42, unknown 260.1
2849 Male, age 72, unknown 245.2
2097 Female, age 72, unknown 240.5
1890 Male, age 53, unknown 203.8
Median raphe nucleus
nTPM: 174.9
2220 Male, age 76, midline 174.9
Pedunculopontine tegmental nucleus
nTPM: 199.6
2338 Male, age 61, both hemispheres 212.8
2334 Male, age 80, both hemispheres 211.4
1921 Female, age 85, both hemispheres 174.6
Periaquaductal grey, anterior
nTPM: 182.3
2502 Female, age 75, unknown 195.1
1795 Male, age 51, unknown 178.2
1947 Male, age 18, unknown 173.6
Periaquaductal grey, dorsal
nTPM: 243.1
2850 Male, age 76, both hemispheres 268.2
1840 Male, age 53, unknown 263.9
2464 Female, age 72, unknown 230.9
1831 Male, age 72, unknown 209.6
Periaquaductal grey, lateral
nTPM: 206.0
2140 Male, age 76, both hemispheres 236.3
2053 Male, age 18, unknown 215.8
2272 Male, age 74, both hemispheres 165.9
Pretectal area
nTPM: 182.7
2224 Female, age 72, unknown 210.6
1817 Female, age 42, unknown 202.8
2825 Male, age 18, unknown 190.4
2316 Male, age 76, right hemisphere 187.9
2407 Male, age 75, both hemispheres 185.8
1815 Male, age 53, unknown 184.8
1944 Female, age 72, unknown 180.1
2273 Male, age 74, both hemispheres 176.6
2667 Female, age 75, unknown 171.1
1816 Male, age 51, unknown 166.7
2007 Male, age 72, unknown 153.0
Red nucleus
nTPM: 218.2
1954 Female, age 42, unknown 274.5
2227 Male, age 72, unknown 249.3
2769 Male, age 72, unknown 245.4
2503 Female, age 72, unknown 236.9
1865 Male, age 51, unknown 234.4
1821 Female, age 72, unknown 230.8
1904 Male, age 53, unknown 221.3
2823 Male, age 76, right hemisphere 214.4
2725 Female, age 75, unknown 192.3
2588 Male, age 74, left hemisphere 181.7
2785 Male, age 18, unknown 179.3
2584 Male, age 75, left hemisphere 158.5
Substantia nigra
nTPM: 182.8
2699 Male, age 18, unknown 251.9
1889 Female, age 72, unknown 200.0
2241 Male, age 72, unknown 177.7
1941 Male, age 53, unknown 177.3
2583 Male, age 75, right hemisphere 174.3
1851 Male, age 51, unknown 171.6
2590 Female, age 75, unknown 171.1
2409 Female, age 72, unknown 170.8
1916 Female, age 42, unknown 170.7
2665 Male, age 74, both hemispheres 162.8
Superior colliculus
nTPM: 189.5
2668 Female, age 75, unknown 219.6
2664 Male, age 75, both hemispheres 216.2
1995 Male, age 72, unknown 213.9
2587 Male, age 74, left hemisphere 195.6
1839 Male, age 51, unknown 193.2
1913 Female, age 42, unknown 188.2
2087 Female, age 72, unknown 183.1
1796 Male, age 53, unknown 166.4
1895 Male, age 76, right hemisphere 161.9
2261 Male, age 18, unknown 157.1
Ventral tegmental area
nTPM: 200.7
2223 Female, age 72, unknown 229.6
1942 Male, age 51, unknown 216.8
2021 Male, age 53, unknown 210.3
1915 Female, age 42, unknown 198.7
2410 Female, age 72, unknown 178.9
2218 Male, age 76, both hemispheres 169.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 310.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 310.2
Samples: 139

Max nTPM: 897.5
Min nTPM: 56.0
Std nTPM: 145.6
Median nTPM: 283.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 897.5
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 718.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 703.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 699.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 627.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 615.0
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 597.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 593.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 563.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 561.1
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 548.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 678.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 678.6
FF:10158-103A5 76 years, female 678.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 104.6
Pig sample Sample description nTPM
Midbrain
nTPM: 54.1
Samples: 4

Max nTPM: 207.5
Min nTPM: 1.5
Sample A Female 207.5
Sample B Female 5.5
Sample C Male 1.7
Sample D Male 1.5
Periaqueductal gray
nTPM: 7.9
Samples: 3

Max nTPM: 14.3
Min nTPM: 3.2
Sample B Female 6.1
Sample C Male 3.2
Sample D Male 14.3
Substantia nigra
nTPM: 104.7
Samples: 4

Max nTPM: 174.5
Min nTPM: 2.6
Sample A Female 151.5
Sample B Female 174.5
Sample C Male 90.0
Sample D Male 2.6
Superior colliculi
nTPM: 9.8
Samples: 4

Max nTPM: 28.8
Min nTPM: 1.5
Sample A Female 28.8
Sample B Female 7.2
Sample C Male 1.5
Sample D Male 1.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.1
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.3
Sample C Female 0.1
Sample D Female 0.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
70785780 Antisense, RP_050706_02_E09, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.