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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:69.1 nTPM
HPA:69.1 nTPM
FANTOM5:169.4 Scaled Tags Per Million

PONS - Annotated protein expression
Pending normal tissue analysis

PONS - HPA Brain RNA-seq
Max nTPM 69.1
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 64.7
2301 Female, age 85, both hemispheres 66.5
2188 Female, age 91, both hemispheres 66.2
1984 Male, age 76, both hemispheres 63.4
2090 Male, age 80, both hemispheres 62.9
Dorsal cochlear nucleus
nTPM: 64.2
2187 Female, age 91, both hemispheres 67.4
2802 Male, age 74, right hemisphere 65.6
2058 Male, age 76, both hemispheres 63.2
2378 Male, age 80, both hemispheres 62.9
2370 Male, age 61, both hemispheres 61.8
Dorsal tegmental nucleus
nTPM: 65.9
1936 Male, age 76, left hemisphere 67.4
2326 Male, age 74, both hemispheres 66.8
2083 Male, age 80, both hemispheres 64.9
2358 Male, age 61, both hemispheres 64.3
Dorsolateral tegmental area
nTPM: 65.1
2751 Female, age 85, both hemispheres 69.0
2654 Male, age 80, both hemispheres 67.0
2141 Male, age 76, both hemispheres 63.8
2360 Male, age 74, both hemispheres 63.6
2337 Male, age 61, both hemispheres 62.0
Kolliker-Fuse nucleus
nTPM: 66.2
2163 Male, age 80, both hemispheres 68.9
2315 Male, age 76, right hemisphere 64.9
2793 Female, age 91, left hemisphere 64.8
Lateral lemniscal nuclei
nTPM: 65.2
2169 Male, age 76, both hemispheres 67.6
2453 Male, age 74, right hemisphere 66.1
2036 Male, age 80, both hemispheres 65.3
2746 Female, age 85, left hemisphere 63.6
2320 Female, age 91, left hemisphere 63.2
Lateral parabrachial nucleus
nTPM: 64.2
2139 Female, age 85, right hemisphere 64.8
2792 Male, age 76, both hemispheres 64.8
2013 Male, age 80, both hemispheres 64.6
2790 Male, age 61, both hemispheres 62.6
Lateral vestibular nucleus
nTPM: 65.9
2184 Male, age 76, both hemispheres 66.7
2311 Male, age 80, both hemispheres 65.1
Locus coeruleus
nTPM: 67.2
2720 Male, age 74, both hemispheres 70.1
2014 Male, age 55, unknown 68.6
2788 Male, age 74, unknown 68.3
2123 Female, age 91, both hemispheres 68.0
1980 Male, age 76, both hemispheres 65.8
2162 Male, age 80, both hemispheres 65.2
2317 Female, age 72, unknown 64.3
Medial olivary nucleus
nTPM: 66.0
1943 Male, age 61, both hemispheres 68.1
2138 Female, age 91, both hemispheres 66.1
2851 Male, age 80, both hemispheres 65.0
1962 Male, age 76, both hemispheres 64.9
Medial parabrachial nucleus
nTPM: 66.1
2170 Female, age 91, both hemispheres 70.7
2854 Male, age 80, both hemispheres 69.1
2786 Male, age 76, both hemispheres 64.0
2156 Male, age 61, both hemispheres 63.7
2463 Female, age 85, right hemisphere 62.8
Medial periolivary nuclei
nTPM: 65.2
2171 Female, age 85, both hemispheres 67.8
2063 Male, age 76, both hemispheres 67.7
2791 Male, age 74, right hemisphere 66.8
2081 Male, age 80, both hemispheres 62.4
2458 Female, age 91, both hemispheres 61.3
Motor facial nucleus
nTPM: 65.8
2062 Male, age 76, both hemispheres 68.5
2365 Male, age 74, right hemisphere 68.2
2697 Female, age 85, both hemispheres 66.8
2795 Female, age 91, both hemispheres 64.2
2126 Male, age 61, both hemispheres 63.5
2327 Male, age 80, both hemispheres 63.5
Motor trigeminal nucleus
nTPM: 63.3
2309 Male, age 76, both hemispheres 65.2
2079 Male, age 80, both hemispheres 63.7
2560 Male, age 74, both hemispheres 63.3
2335 Male, age 61, both hemispheres 62.4
2321 Female, age 91, both hemispheres 62.0
Nuclei of the trapezoid body
nTPM: 66.4
2159 Male, age 61, both hemispheres 70.0
1983 Male, age 76, both hemispheres 68.4
2735 Female, age 85, both hemispheres 67.3
2166 Male, age 80, both hemispheres 63.7
2368 Female, age 91, both hemispheres 62.6
Paramedian reticular nucleus
nTPM: 69.1
2050 Female, age 85, both hemispheres 72.9
2052 Male, age 76, both hemispheres 69.9
2313 Male, age 61, both hemispheres 68.1
2057 Male, age 80, both hemispheres 65.6
Pontine nuclei
nTPM: 67.2
2727 Male, age 61, right hemisphere 71.3
1863 Male, age 55, unknown 70.6
2454 Male, age 74, left hemisphere 68.4
2109 Female, age 72, unknown 66.9
1968 Male, age 76, left hemisphere 66.8
2787 Female, age 85, both hemispheres 66.7
2319 Female, age 91, both hemispheres 66.4
2115 Male, age 80, left hemisphere 60.7
Pontine raphe nucleus
nTPM: 66.6
2122 Female, age 85, midline 67.6
2853 Male, age 76, midline 65.6
Posteroventral cochlear nucleus
nTPM: 66.0
2752 Female, age 85, both hemispheres 67.9
2341 Male, age 80, both hemispheres 67.8
2135 Female, age 91, both hemispheres 65.5
2070 Male, age 76, both hemispheres 65.0
2371 Male, age 61, both hemispheres 63.6
Principal sensory trigeminal nucleus
nTPM: 66.4
2158 Male, age 61, both hemispheres 67.4
2324 Male, age 76, both hemispheres 67.0
2008 Male, age 80, left hemisphere 66.7
2367 Female, age 91, left hemisphere 64.7
Reticular pontine nucleus, caudal
nTPM: 64.2
2092 Male, age 76, both hemispheres 65.8
2559 Male, age 74, both hemispheres 65.7
2332 Male, age 80, right hemisphere 62.8
2457 Female, age 91, both hemispheres 62.4
Reticular pontine nucleus, oral
nTPM: 68.1
2361 Male, age 74, both hemispheres 69.8
2012 Female, age 85, both hemispheres 69.6
1939 Male, age 80, both hemispheres 69.3
2167 Male, age 76, both hemispheres 65.8
2366 Female, age 91, both hemispheres 65.8
Reticulotegmental nucleus
nTPM: 64.9
2325 Male, age 76, both hemispheres 65.7
2322 Female, age 91, both hemispheres 65.1
2333 Male, age 80, both hemispheres 64.8
2452 Male, age 74, both hemispheres 64.1
Spinal trigeminal nucleus, oral
nTPM: 65.8
2737 Female, age 85, both hemispheres 67.4
2164 Male, age 80, both hemispheres 66.3
1978 Male, age 76, both hemispheres 63.6
Subcoeruleus area
nTPM: 67.1
1958 Male, age 80, both hemispheres 69.7
2323 Female, age 91, left hemisphere 69.0
2369 Female, age 85, left hemisphere 68.2
2451 Male, age 74, both hemispheres 65.4
2089 Male, age 76, left hemisphere 63.3
Superior olive
nTPM: 65.5
1875 Female, age 85, both hemispheres 71.0
2364 Male, age 74, right hemisphere 67.4
2020 Male, age 76, both hemispheres 65.4
2329 Male, age 80, right hemisphere 62.1
2561 Female, age 91, both hemispheres 61.4
Superior vestibular nucleus
nTPM: 66.6
2383 Male, age 74, both hemispheres 70.0
2015 Male, age 80, both hemispheres 66.9
2061 Male, age 76, both hemispheres 62.8
Ventral periolivary nuclei
nTPM: 65.9
2130 Female, age 85, both hemispheres 67.3
2023 Male, age 76, both hemispheres 66.8
2165 Male, age 80, both hemispheres 66.2
2794 Female, age 91, left hemisphere 63.4
Ventrolateral tegmental area, A5 NE cell group
nTPM: 66.1
2840 Female, age 85, both hemispheres 70.7
1959 Male, age 76, both hemispheres 67.6
2449 Male, age 74, both hemispheres 67.2
2359 Male, age 61, both hemispheres 64.7
2161 Male, age 80, both hemispheres 64.3
2456 Female, age 91, both hemispheres 62.1

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 169.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 111.3
FF:10182-103D2 60 years, female 111.5
FF:10165-103B3 76 years, female 111.1
Pons
Scaled Tags Per Million: 169.4
FF:10033-101E6 18-54 years, mixed 169.4

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