MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:277.8 nTPM
HPA:277.8 nTPM
GTEx:478.8 nTPM
FANTOM5:290.2 Scaled Tags Per Million
Pig:188.1 nTPM
Mouse:470.0 nTPM
Allen mouse:6.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 277.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 256.8
2019 Male, age 18, unknown 273.7
1870 Female, age 42, unknown 271.8
2219 Male, age 76, both hemispheres 259.9
2411 Female, age 72, unknown 256.7
1827 Male, age 72, unknown 256.4
2666 Male, age 74, left hemisphere 252.9
2828 Female, age 72, unknown 250.3
1833 Male, age 53, unknown 250.2
2586 Male, age 75, left hemisphere 249.4
1830 Male, age 51, unknown 246.5
Dorsal raphe nucleus
nTPM: 251.8
1828 Male, age 53, unknown 262.0
2750 Male, age 76, both hemispheres 257.6
2298 Female, age 72, unknown 249.5
2047 Male, age 72, unknown 246.4
2016 Female, age 72, unknown 243.4
Inferior colliculus
nTPM: 266.9
1890 Male, age 53, unknown 278.1
2097 Female, age 72, unknown 276.1
1848 Female, age 42, unknown 260.9
2849 Male, age 72, unknown 252.6
Median raphe nucleus
nTPM: 253.3
2220 Male, age 76, midline 253.3
Pedunculopontine tegmental nucleus
nTPM: 269.0
2338 Male, age 61, both hemispheres 273.0
2334 Male, age 80, both hemispheres 272.9
1921 Female, age 85, both hemispheres 261.2
Periaquaductal grey, anterior
nTPM: 250.7
2502 Female, age 75, unknown 253.4
1947 Male, age 18, unknown 249.4
1795 Male, age 51, unknown 249.1
Periaquaductal grey, dorsal
nTPM: 243.1
2850 Male, age 76, both hemispheres 248.4
1831 Male, age 72, unknown 243.3
1840 Male, age 53, unknown 241.9
2464 Female, age 72, unknown 239.0
Periaquaductal grey, lateral
nTPM: 239.5
2053 Male, age 18, unknown 243.7
2140 Male, age 76, both hemispheres 238.5
2272 Male, age 74, both hemispheres 236.2
Pretectal area
nTPM: 255.9
2007 Male, age 72, unknown 279.3
1817 Female, age 42, unknown 276.2
1944 Female, age 72, unknown 274.4
1816 Male, age 51, unknown 267.9
1815 Male, age 53, unknown 259.1
2667 Female, age 75, unknown 256.1
2224 Female, age 72, unknown 247.0
2316 Male, age 76, right hemisphere 246.6
2825 Male, age 18, unknown 245.9
2273 Male, age 74, both hemispheres 232.0
2407 Male, age 75, both hemispheres 230.4
Red nucleus
nTPM: 277.8
2503 Female, age 72, unknown 296.2
2725 Female, age 75, unknown 292.4
1821 Female, age 72, unknown 290.4
2588 Male, age 74, left hemisphere 290.1
1865 Male, age 51, unknown 280.1
2769 Male, age 72, unknown 277.5
1954 Female, age 42, unknown 274.4
2823 Male, age 76, right hemisphere 272.7
2227 Male, age 72, unknown 272.5
2785 Male, age 18, unknown 272.1
1904 Male, age 53, unknown 269.0
2584 Male, age 75, left hemisphere 245.7
Substantia nigra
nTPM: 267.7
1916 Female, age 42, unknown 290.8
1889 Female, age 72, unknown 284.2
1851 Male, age 51, unknown 274.2
2409 Female, age 72, unknown 274.0
2665 Male, age 74, both hemispheres 269.8
1941 Male, age 53, unknown 266.9
2241 Male, age 72, unknown 265.3
2699 Male, age 18, unknown 263.3
2583 Male, age 75, right hemisphere 246.2
2590 Female, age 75, unknown 242.4
Superior colliculus
nTPM: 251.0
1895 Male, age 76, right hemisphere 268.4
2668 Female, age 75, unknown 257.3
2087 Female, age 72, unknown 256.5
1796 Male, age 53, unknown 256.2
2587 Male, age 74, left hemisphere 255.7
1913 Female, age 42, unknown 253.9
1995 Male, age 72, unknown 248.2
1839 Male, age 51, unknown 246.7
2261 Male, age 18, unknown 244.8
2664 Male, age 75, both hemispheres 222.1
Ventral tegmental area
nTPM: 262.7
2223 Female, age 72, unknown 278.1
1915 Female, age 42, unknown 269.1
2218 Male, age 76, both hemispheres 268.4
2410 Female, age 72, unknown 263.4
1942 Male, age 51, unknown 254.0
2021 Male, age 53, unknown 243.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 478.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 478.8
Samples: 139

Max nTPM: 1367.1
Min nTPM: 227.9
Std nTPM: 161.2
Median nTPM: 450.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1367.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1035.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 908.3
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 874.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 858.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 807.7
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 785.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 747.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 714.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 695.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 674.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 290.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 290.2
FF:10158-103A5 76 years, female 290.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 188.1
Pig sample Sample description nTPM
Midbrain
nTPM: 167.2
Samples: 4

Max nTPM: 212.2
Min nTPM: 141.1
Sample A Female 164.7
Sample B Female 141.1
Sample C Male 212.2
Sample D Male 150.9
Periaqueductal gray
nTPM: 112.9
Samples: 3

Max nTPM: 128.7
Min nTPM: 99.1
Sample B Female 110.9
Sample C Male 128.7
Sample D Male 99.1
Substantia nigra
nTPM: 137.6
Samples: 4

Max nTPM: 188.8
Min nTPM: 106.8
Sample A Female 188.8
Sample B Female 106.9
Sample C Male 147.7
Sample D Male 106.8
Superior colliculi
nTPM: 188.2
Samples: 4

Max nTPM: 238.1
Min nTPM: 144.9
Sample A Female 209.2
Sample B Female 144.9
Sample C Male 238.1
Sample D Male 160.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 470.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 470.0
Samples: 4

Max nTPM: 517.4
Min nTPM: 439.0
Sample A Male 517.4
Sample B Male 441.9
Sample C Female 439.0
Sample D Female 481.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.1
68631911 Antisense, RP_050125_01_C12, Mouse strain C57BL/6J (56 days, male) 6.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.