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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:20.7 nTPM
HPA:20.7 nTPM
GTEx:19.3 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 20.7
Sample id Sample description nTPM
Amygdala
nTPM: 20.4
2514 Male, age 75, right hemisphere 20.8
2517 Female, age 94, left hemisphere 20.5
2695 Female, age 67, right hemisphere 20.3
2814 Male, age 76, right hemisphere 20.3
1987 Female, age 91, left hemisphere 20.2
Basal amygdala
nTPM: 20.4
2609 Male, age 75, right hemisphere 20.9
1955 Male, age 76, both hemispheres 20.8
2110 Male, age 80, left hemisphere 20.5
2685 Female, age 94, left hemisphere 20.2
2827 Female, age 67, right hemisphere 20.1
2243 Female, age 91, right hemisphere 20.0
Central amygdala
nTPM: 20.6
2515 Male, age 75, right hemisphere 21.1
2701 Female, age 91, right hemisphere 20.8
1905 Male, age 76, both hemispheres 20.6
2826 Female, age 94, left hemisphere 20.4
2239 Male, age 80, left hemisphere 20.2
Corticomedial amygdala
nTPM: 20.7
2428 Male, age 75, right hemisphere 21.2
2242 Female, age 91, right hemisphere 20.8
2429 Female, age 94, left hemisphere 20.7
2829 Male, age 80, left hemisphere 20.6
2240 Male, age 76, both hemispheres 20.4
2535 Female, age 67, right hemisphere 20.1
Lateral amygdala
nTPM: 20.4
1883 Male, age 76, both hemispheres 20.7
2534 Female, age 94, left hemisphere 20.6
2516 Male, age 75, right hemisphere 20.5
2255 Female, age 91, right hemisphere 20.2
2256 Male, age 80, left hemisphere 20.2
2830 Female, age 67, right hemisphere 20.0
Stria terminalis, bed nucleus
nTPM: 20.6
1974 Female, age 91, both hemispheres 20.7
2201 Male, age 74, unknown 20.7
2486 Female, age 94, both hemispheres 20.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 19.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 19.3
Samples: 152

Max nTPM: 52.1
Min nTPM: 3.5
Std nTPM: 8.5
Median nTPM: 18.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 52.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 44.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 41.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 39.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 38.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 38.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 37.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 36.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 36.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 35.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 35.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 35.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 35.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 33.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 30.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 29.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 29.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 29.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 29.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 28.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 28.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 28.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 27.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 27.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 26.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 26.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 25.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 25.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 25.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 24.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 24.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 24.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 24.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 24.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 24.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 24.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 24.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 23.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 23.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 22.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 22.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 22.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 22.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 22.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 22.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 21.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 21.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 21.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 21.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 21.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 21.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 21.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 21.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 21.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 21.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 21.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 21.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 20.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 20.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 20.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 20.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 20.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 20.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 19.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 19.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 19.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 19.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 19.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 19.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 19.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 18.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 18.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 18.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 18.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 18.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 18.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 18.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 17.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 17.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 17.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 17.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 17.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 17.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 17.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 17.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 17.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 17.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 17.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 16.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 16.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 16.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 16.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 16.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 15.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 15.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 15.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 15.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 15.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 15.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 15.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 15.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 15.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 14.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 14.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 14.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 14.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 14.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 13.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 13.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 13.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 13.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 13.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 13.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 13.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 13.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 13.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 13.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 13.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 13.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 13.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 12.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 12.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 12.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 12.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 12.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 11.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 11.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 11.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 11.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 11.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 11.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 10.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 10.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 10.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 10.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 10.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 10.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 9.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 8.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 8.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 8.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 8.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 8.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 7.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 7.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 6.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 6.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 6.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 5.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 4.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 4.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 3.5
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