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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:201.9 nTPM
HPA:201.9 nTPM
GTEx:224.2 nTPM
FANTOM5:942.5 Scaled Tags Per Million
Pig:220.4 nTPM
Mouse:202.8 nTPM
Allen mouse:15.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 201.9
Sample id Sample description nTPM
Amygdala
nTPM: 201.9
2514 Male, age 75, right hemisphere 280.2
1987 Female, age 91, left hemisphere 233.8
2517 Female, age 94, left hemisphere 182.3
2695 Female, age 67, right hemisphere 165.3
2814 Male, age 76, right hemisphere 148.0
Basal amygdala
nTPM: 161.8
2609 Male, age 75, right hemisphere 303.4
2243 Female, age 91, right hemisphere 176.4
2110 Male, age 80, left hemisphere 143.2
2685 Female, age 94, left hemisphere 142.1
1955 Male, age 76, both hemispheres 141.0
2827 Female, age 67, right hemisphere 64.8
Central amygdala
nTPM: 169.9
2515 Male, age 75, right hemisphere 230.7
2701 Female, age 91, right hemisphere 174.9
2239 Male, age 80, left hemisphere 158.1
1905 Male, age 76, both hemispheres 147.2
2826 Female, age 94, left hemisphere 138.8
Corticomedial amygdala
nTPM: 173.4
2428 Male, age 75, right hemisphere 267.2
2242 Female, age 91, right hemisphere 189.5
2829 Male, age 80, left hemisphere 184.7
2429 Female, age 94, left hemisphere 173.4
2240 Male, age 76, both hemispheres 144.1
2535 Female, age 67, right hemisphere 81.4
Lateral amygdala
nTPM: 149.0
2516 Male, age 75, right hemisphere 257.8
2255 Female, age 91, right hemisphere 158.5
2256 Male, age 80, left hemisphere 155.6
2534 Female, age 94, left hemisphere 132.9
1883 Male, age 76, both hemispheres 130.5
2830 Female, age 67, right hemisphere 58.5
Stria terminalis, bed nucleus
nTPM: 145.2
2201 Male, age 74, unknown 164.0
1974 Female, age 91, both hemispheres 139.0
2486 Female, age 94, both hemispheres 132.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 224.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 224.2
Samples: 152

Max nTPM: 560.5
Min nTPM: 4.6
Std nTPM: 112.9
Median nTPM: 210.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 560.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 498.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 496.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 488.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 481.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 453.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 432.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 419.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 409.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 394.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 391.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 382.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 374.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 370.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 370.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 367.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 360.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 358.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 356.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 354.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 348.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 347.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 344.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 343.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 342.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 339.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 337.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 333.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 327.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 327.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 327.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 326.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 326.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 325.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 320.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 319.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 315.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 314.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 304.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 304.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 302.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 299.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 296.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 295.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 292.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 290.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 288.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 288.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 281.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 280.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 279.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 278.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 271.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 270.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 269.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 269.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 261.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 260.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 258.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 256.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 248.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 246.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 238.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 236.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 235.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 234.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 231.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 230.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 229.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 228.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 222.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 217.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 214.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 212.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 211.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 211.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 208.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 207.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 202.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 201.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 200.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 199.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 197.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 192.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 190.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 190.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 188.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 185.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 183.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 176.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 173.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 173.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 173.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 170.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 169.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 168.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 167.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 165.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 164.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 163.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 162.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 155.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 155.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 154.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 152.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 151.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 149.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 149.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 148.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 146.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 146.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 144.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 144.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 137.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 136.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 136.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 134.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 134.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 128.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 128.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 126.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 125.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 124.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 123.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 122.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 117.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 114.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 101.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 100.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 96.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 95.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 94.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 94.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 92.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 86.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 83.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 83.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 83.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 82.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 81.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 78.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 78.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 68.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 64.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 61.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 49.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 49.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 47.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 46.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 36.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 22.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 4.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 942.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 942.5
FF:10151-102I7 76 years, female 942.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 220.4
Pig sample Sample description nTPM
Amygdala
nTPM: 220.4
Samples: 4

Max nTPM: 232.0
Min nTPM: 203.0
Sample A Female 203.0
Sample B Female 232.0
Sample C Male 222.5
Sample D Male 224.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 202.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 202.8
Samples: 4

Max nTPM: 217.0
Min nTPM: 177.1
Sample A Male 201.5
Sample B Male 177.1
Sample C Female 217.0
Sample D Female 215.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 15.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 15.5
79360318 Antisense, RP_071018_02_A09, Mouse strain C57BL/6J (56 days, male) 20.4
747 Antisense, RP_Baylor_253946, Mouse strain C57BL/6J (56 days, male) 10.7
746 Antisense, RP_Baylor_253946, Mouse strain C57BL/6J (56 days, male) 7.7

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