MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:218.9 nTPM
HPA:218.9 nTPM
GTEx:116.8 nTPM
FANTOM5:380.6 Scaled Tags Per Million
Pig:234.3 nTPM
Mouse:212.7 nTPM
Allen mouse:10.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 218.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 134.3
2586 Male, age 75, left hemisphere 228.7
2828 Female, age 72, unknown 186.9
1827 Male, age 72, unknown 164.6
1870 Female, age 42, unknown 133.8
2666 Male, age 74, left hemisphere 122.9
2411 Female, age 72, unknown 120.3
1833 Male, age 53, unknown 118.1
2219 Male, age 76, both hemispheres 99.6
1830 Male, age 51, unknown 98.4
2019 Male, age 18, unknown 69.9
Dorsal raphe nucleus
nTPM: 178.5
2016 Female, age 72, unknown 208.1
2047 Male, age 72, unknown 198.5
2298 Female, age 72, unknown 196.2
1828 Male, age 53, unknown 178.2
2750 Male, age 76, both hemispheres 111.7
Inferior colliculus
nTPM: 188.6
1848 Female, age 42, unknown 220.5
2849 Male, age 72, unknown 200.8
2097 Female, age 72, unknown 172.7
1890 Male, age 53, unknown 160.6
Median raphe nucleus
nTPM: 131.9
2220 Male, age 76, midline 131.9
Pedunculopontine tegmental nucleus
nTPM: 117.2
2334 Male, age 80, both hemispheres 144.3
1921 Female, age 85, both hemispheres 136.3
2338 Male, age 61, both hemispheres 71.1
Periaquaductal grey, anterior
nTPM: 195.8
1795 Male, age 51, unknown 201.9
1947 Male, age 18, unknown 198.0
2502 Female, age 75, unknown 187.4
Periaquaductal grey, dorsal
nTPM: 218.9
1840 Male, age 53, unknown 284.8
2850 Male, age 76, both hemispheres 233.8
2464 Female, age 72, unknown 194.7
1831 Male, age 72, unknown 162.4
Periaquaductal grey, lateral
nTPM: 183.7
2053 Male, age 18, unknown 220.6
2140 Male, age 76, both hemispheres 207.8
2272 Male, age 74, both hemispheres 122.6
Pretectal area
nTPM: 170.7
2667 Female, age 75, unknown 211.8
1944 Female, age 72, unknown 193.0
1816 Male, age 51, unknown 189.5
2825 Male, age 18, unknown 187.4
2273 Male, age 74, both hemispheres 184.1
2224 Female, age 72, unknown 182.4
1817 Female, age 42, unknown 175.4
1815 Male, age 53, unknown 156.1
2407 Male, age 75, both hemispheres 151.3
2316 Male, age 76, right hemisphere 138.6
2007 Male, age 72, unknown 108.1
Red nucleus
nTPM: 117.5
1954 Female, age 42, unknown 148.3
2725 Female, age 75, unknown 140.8
2503 Female, age 72, unknown 136.0
1821 Female, age 72, unknown 131.9
2227 Male, age 72, unknown 126.9
2769 Male, age 72, unknown 125.8
2588 Male, age 74, left hemisphere 119.4
1904 Male, age 53, unknown 112.5
1865 Male, age 51, unknown 107.5
2823 Male, age 76, right hemisphere 96.5
2584 Male, age 75, left hemisphere 92.0
2785 Male, age 18, unknown 72.9
Substantia nigra
nTPM: 142.5
2699 Male, age 18, unknown 226.8
1916 Female, age 42, unknown 169.7
1889 Female, age 72, unknown 156.3
2241 Male, age 72, unknown 142.8
1851 Male, age 51, unknown 134.8
2665 Male, age 74, both hemispheres 132.3
2583 Male, age 75, right hemisphere 122.0
2409 Female, age 72, unknown 113.6
1941 Male, age 53, unknown 113.4
2590 Female, age 75, unknown 113.3
Superior colliculus
nTPM: 166.2
2664 Male, age 75, both hemispheres 229.2
2261 Male, age 18, unknown 190.0
2087 Female, age 72, unknown 184.6
1796 Male, age 53, unknown 181.9
1995 Male, age 72, unknown 177.1
1839 Male, age 51, unknown 171.4
2587 Male, age 74, left hemisphere 143.6
1913 Female, age 42, unknown 142.5
2668 Female, age 75, unknown 136.4
1895 Male, age 76, right hemisphere 104.9
Ventral tegmental area
nTPM: 136.5
1942 Male, age 51, unknown 159.0
2021 Male, age 53, unknown 152.9
2410 Female, age 72, unknown 135.3
1915 Female, age 42, unknown 130.4
2218 Male, age 76, both hemispheres 126.8
2223 Female, age 72, unknown 114.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 116.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 116.8
Samples: 139

Max nTPM: 417.8
Min nTPM: 19.7
Std nTPM: 66.5
Median nTPM: 103.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 417.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 354.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 300.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 292.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 274.3
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 268.5
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 237.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 232.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 229.6
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 228.1
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 221.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 380.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 380.6
FF:10158-103A5 76 years, female 380.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 234.3
Pig sample Sample description nTPM
Midbrain
nTPM: 234.3
Samples: 4

Max nTPM: 305.9
Min nTPM: 189.5
Sample A Female 305.9
Sample B Female 193.6
Sample C Male 248.1
Sample D Male 189.5
Periaqueductal gray
nTPM: 212.1
Samples: 3

Max nTPM: 235.1
Min nTPM: 181.5
Sample B Female 219.6
Sample C Male 235.1
Sample D Male 181.5
Substantia nigra
nTPM: 180.9
Samples: 4

Max nTPM: 200.8
Min nTPM: 160.9
Sample A Female 195.0
Sample B Female 166.9
Sample C Male 200.8
Sample D Male 160.9
Superior colliculi
nTPM: 154.6
Samples: 4

Max nTPM: 183.1
Min nTPM: 93.9
Sample A Female 158.8
Sample B Female 93.9
Sample C Male 183.1
Sample D Male 182.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 212.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 212.7
Samples: 4

Max nTPM: 223.4
Min nTPM: 203.7
Sample A Male 203.7
Sample B Male 208.6
Sample C Female 215.2
Sample D Female 223.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.9
79360318 Antisense, RP_071018_02_A09, Mouse strain C57BL/6J (56 days, male) 13.9
747 Antisense, RP_Baylor_253946, Mouse strain C57BL/6J (56 days, male) 7.9
746 Antisense, RP_Baylor_253946, Mouse strain C57BL/6J (56 days, male) 2.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.