We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
GSN
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • GSN
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:270.6 nTPM
HPA:270.6 nTPM
GTEx:523.6 nTPM
FANTOM5:435.4 Scaled Tags Per Million
Pig:264.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 270.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 246.8
1981 Female, age 72, midline 317.1
2048 Male, age 55, midline 252.9
2816 Male, age 47, midline 250.2
2194 Female, age 79, both hemispheres 230.6
2565 Male, age 75, midline 183.4
Cervical spinal cord, dorsal horn
nTPM: 254.5
2173 Female, age 72, unknown 397.6
2296 Male, age 66, both hemispheres 339.6
2069 Male, age 47, both hemispheres 249.4
1877 Male, age 55, unknown 236.2
2721 Male, age 90, both hemispheres 168.0
2297 Male, age 75, both hemispheres 135.9
Cervical spinal cord, ventral horn
nTPM: 270.6
2098 Female, age 72, unknown 415.6
2068 Male, age 55, unknown 310.4
2809 Male, age 90, both hemispheres 241.9
2820 Female, age 79, both hemispheres 239.1
2295 Male, age 66, both hemispheres 223.0
2480 Male, age 75, both hemispheres 193.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 523.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 523.6
Samples: 159

Max nTPM: 1136.9
Min nTPM: 147.5
Std nTPM: 177.5
Median nTPM: 506.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1136.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 891.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 871.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 869.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 865.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 855.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 813.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 806.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 803.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 794.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 790.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 789.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 784.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 784.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 783.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 775.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 775.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 771.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 766.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 751.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 748.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 744.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 741.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 736.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 732.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 719.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 703.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 689.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 680.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 677.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 673.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 671.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 670.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 667.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 665.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 664.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 660.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 660.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 655.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 654.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 651.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 644.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 642.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 642.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 639.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 634.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 629.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 624.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 617.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 615.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 611.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 608.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 606.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 605.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 604.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 591.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 589.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 589.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 584.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 580.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 577.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 574.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 574.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 573.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 573.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 571.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 570.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 565.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 561.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 536.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 534.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 534.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 525.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 525.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 524.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 523.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 522.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 521.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 518.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 506.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 501.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 499.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 495.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 495.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 492.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 488.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 487.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 487.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 487.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 476.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 467.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 466.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 462.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 460.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 460.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 458.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 458.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 451.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 450.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 450.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 450.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 449.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 449.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 443.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 439.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 438.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 436.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 422.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 421.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 421.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 419.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 419.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 415.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 413.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 406.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 400.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 390.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 384.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 378.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 373.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 371.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 370.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 367.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 365.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 354.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 353.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 352.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 351.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 350.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 350.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 340.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 337.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 336.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 335.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 330.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 330.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 330.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 320.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 318.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 316.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 309.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 308.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 303.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 299.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 297.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 292.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 291.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 289.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 288.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 287.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 286.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 281.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 269.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 263.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 205.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 189.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 182.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 170.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 147.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 435.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 435.4
FF:10181-103D1 60 years, female 565.0
FF:10159-103A6 76 years, female 305.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 264.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 252.1
Samples: 4

Max nTPM: 335.7
Min nTPM: 219.2
Sample A Female 219.2
Sample B Female 222.5
Sample C Male 335.7
Sample D Male 230.8
Ventral spinal cord
nTPM: 264.3
Samples: 4

Max nTPM: 306.8
Min nTPM: 226.5
Sample A Female 265.2
Sample B Female 226.5
Sample C Male 258.7
Sample D Male 306.8

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.