MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:284.6 nTPM
HPA:284.6 nTPM
GTEx:306.4 nTPM
FANTOM5:541.2 Scaled Tags Per Million
Pig:129.1 nTPM
Mouse:128.1 nTPM
Allen mouse:6.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 284.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 233.3
2019 Male, age 18, unknown 296.9
1870 Female, age 42, unknown 278.3
2411 Female, age 72, unknown 277.9
1830 Male, age 51, unknown 275.4
1833 Male, age 53, unknown 252.5
2828 Female, age 72, unknown 234.2
2586 Male, age 75, left hemisphere 210.1
1827 Male, age 72, unknown 178.1
2219 Male, age 76, both hemispheres 166.4
2666 Male, age 74, left hemisphere 163.1
Dorsal raphe nucleus
nTPM: 189.8
2750 Male, age 76, both hemispheres 268.7
2016 Female, age 72, unknown 194.3
1828 Male, age 53, unknown 187.8
2047 Male, age 72, unknown 150.9
2298 Female, age 72, unknown 147.4
Inferior colliculus
nTPM: 168.1
1890 Male, age 53, unknown 186.7
1848 Female, age 42, unknown 179.1
2097 Female, age 72, unknown 153.9
2849 Male, age 72, unknown 152.8
Median raphe nucleus
nTPM: 197.6
2220 Male, age 76, midline 197.6
Pedunculopontine tegmental nucleus
nTPM: 231.2
2338 Male, age 61, both hemispheres 295.1
2334 Male, age 80, both hemispheres 229.5
1921 Female, age 85, both hemispheres 169.0
Periaquaductal grey, anterior
nTPM: 167.3
2502 Female, age 75, unknown 183.4
1795 Male, age 51, unknown 162.0
1947 Male, age 18, unknown 156.4
Periaquaductal grey, dorsal
nTPM: 164.4
2850 Male, age 76, both hemispheres 197.9
2464 Female, age 72, unknown 179.4
1831 Male, age 72, unknown 162.9
1840 Male, age 53, unknown 117.2
Periaquaductal grey, lateral
nTPM: 201.0
2140 Male, age 76, both hemispheres 224.8
2272 Male, age 74, both hemispheres 197.2
2053 Male, age 18, unknown 180.9
Pretectal area
nTPM: 180.7
2316 Male, age 76, right hemisphere 230.0
2273 Male, age 74, both hemispheres 226.1
2667 Female, age 75, unknown 210.2
1815 Male, age 53, unknown 202.0
2407 Male, age 75, both hemispheres 191.6
1817 Female, age 42, unknown 182.1
2825 Male, age 18, unknown 173.1
2007 Male, age 72, unknown 169.0
2224 Female, age 72, unknown 158.3
1944 Female, age 72, unknown 130.5
1816 Male, age 51, unknown 115.4
Red nucleus
nTPM: 284.6
2769 Male, age 72, unknown 338.6
2227 Male, age 72, unknown 337.7
1904 Male, age 53, unknown 337.6
1865 Male, age 51, unknown 333.6
2785 Male, age 18, unknown 322.6
1954 Female, age 42, unknown 312.8
1821 Female, age 72, unknown 297.5
2503 Female, age 72, unknown 276.4
2823 Male, age 76, right hemisphere 264.8
2588 Male, age 74, left hemisphere 204.9
2584 Male, age 75, left hemisphere 199.1
2725 Female, age 75, unknown 190.0
Substantia nigra
nTPM: 196.7
1851 Male, age 51, unknown 237.3
2583 Male, age 75, right hemisphere 235.1
2590 Female, age 75, unknown 226.4
2409 Female, age 72, unknown 218.3
2699 Male, age 18, unknown 211.0
1889 Female, age 72, unknown 179.2
1916 Female, age 42, unknown 176.2
1941 Male, age 53, unknown 170.8
2241 Male, age 72, unknown 160.9
2665 Male, age 74, both hemispheres 152.0
Superior colliculus
nTPM: 192.3
1995 Male, age 72, unknown 281.4
1913 Female, age 42, unknown 260.1
2587 Male, age 74, left hemisphere 214.9
1839 Male, age 51, unknown 193.0
1796 Male, age 53, unknown 178.4
2668 Female, age 75, unknown 175.4
1895 Male, age 76, right hemisphere 163.5
2664 Male, age 75, both hemispheres 158.6
2087 Female, age 72, unknown 155.8
2261 Male, age 18, unknown 141.5
Ventral tegmental area
nTPM: 233.7
2223 Female, age 72, unknown 316.2
2410 Female, age 72, unknown 244.7
2021 Male, age 53, unknown 223.1
1942 Male, age 51, unknown 209.8
1915 Female, age 42, unknown 206.4
2218 Male, age 76, both hemispheres 201.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 306.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 306.4
Samples: 139

Max nTPM: 889.3
Min nTPM: 94.8
Std nTPM: 120.4
Median nTPM: 273.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 889.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 757.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 658.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 634.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 594.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 578.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 550.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 548.1
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 531.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 489.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 483.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 541.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 541.2
FF:10158-103A5 76 years, female 541.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 129.1
Pig sample Sample description nTPM
Midbrain
nTPM: 124.5
Samples: 4

Max nTPM: 319.9
Min nTPM: 42.5
Sample A Female 319.9
Sample B Female 71.8
Sample C Male 63.9
Sample D Male 42.5
Periaqueductal gray
nTPM: 79.7
Samples: 3

Max nTPM: 90.3
Min nTPM: 69.4
Sample B Female 69.4
Sample C Male 79.3
Sample D Male 90.3
Substantia nigra
nTPM: 122.1
Samples: 4

Max nTPM: 152.7
Min nTPM: 86.7
Sample A Female 102.8
Sample B Female 152.7
Sample C Male 86.7
Sample D Male 146.0
Superior colliculi
nTPM: 129.1
Samples: 4

Max nTPM: 218.9
Min nTPM: 87.9
Sample A Female 120.8
Sample B Female 218.9
Sample C Male 87.9
Sample D Male 88.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 128.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 128.1
Samples: 4

Max nTPM: 150.1
Min nTPM: 108.7
Sample A Male 118.2
Sample B Male 108.7
Sample C Female 135.4
Sample D Female 150.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.0
72081395 Antisense, RP_051017_01_C01, Mouse strain C57BL/6J (56 days, male) 9.8
68444642 Antisense, RP_050111_02_C03, Mouse strain C57BL/6J (56 days, male) 2.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.