MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:83.5 nTPM
HPA:83.5 nTPM
GTEx:103.5 nTPM
FANTOM5:146.4 Scaled Tags Per Million
Pig:10.2 nTPM
Mouse:25.6 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 83.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 78.3
2586 Male, age 75, left hemisphere 85.9
2828 Female, age 72, unknown 84.6
2666 Male, age 74, left hemisphere 82.0
2411 Female, age 72, unknown 79.0
1830 Male, age 51, unknown 78.6
1870 Female, age 42, unknown 78.3
2019 Male, age 18, unknown 76.4
1833 Male, age 53, unknown 74.7
1827 Male, age 72, unknown 73.7
2219 Male, age 76, both hemispheres 70.1
Dorsal raphe nucleus
nTPM: 75.3
2016 Female, age 72, unknown 83.0
1828 Male, age 53, unknown 79.8
2750 Male, age 76, both hemispheres 76.3
2047 Male, age 72, unknown 69.7
2298 Female, age 72, unknown 67.5
Inferior colliculus
nTPM: 73.1
2849 Male, age 72, unknown 77.3
1890 Male, age 53, unknown 74.0
1848 Female, age 42, unknown 70.5
2097 Female, age 72, unknown 70.5
Median raphe nucleus
nTPM: 67.1
2220 Male, age 76, midline 67.1
Pedunculopontine tegmental nucleus
nTPM: 75.4
2338 Male, age 61, both hemispheres 77.7
2334 Male, age 80, both hemispheres 75.9
1921 Female, age 85, both hemispheres 72.6
Periaquaductal grey, anterior
nTPM: 72.3
2502 Female, age 75, unknown 74.5
1947 Male, age 18, unknown 72.2
1795 Male, age 51, unknown 70.3
Periaquaductal grey, dorsal
nTPM: 73.8
2464 Female, age 72, unknown 76.5
1840 Male, age 53, unknown 74.8
2850 Male, age 76, both hemispheres 73.0
1831 Male, age 72, unknown 70.9
Periaquaductal grey, lateral
nTPM: 74.4
2053 Male, age 18, unknown 78.2
2140 Male, age 76, both hemispheres 77.2
2272 Male, age 74, both hemispheres 67.9
Pretectal area
nTPM: 72.8
2667 Female, age 75, unknown 78.0
2407 Male, age 75, both hemispheres 77.1
2825 Male, age 18, unknown 76.0
2316 Male, age 76, right hemisphere 75.6
1815 Male, age 53, unknown 73.8
1817 Female, age 42, unknown 71.8
2224 Female, age 72, unknown 71.8
1944 Female, age 72, unknown 70.6
1816 Male, age 51, unknown 69.3
2007 Male, age 72, unknown 68.8
2273 Male, age 74, both hemispheres 68.4
Red nucleus
nTPM: 83.5
2503 Female, age 72, unknown 89.2
2769 Male, age 72, unknown 87.3
2227 Male, age 72, unknown 86.2
2588 Male, age 74, left hemisphere 85.8
1954 Female, age 42, unknown 84.9
1865 Male, age 51, unknown 84.1
2725 Female, age 75, unknown 84.1
1821 Female, age 72, unknown 82.9
1904 Male, age 53, unknown 81.0
2823 Male, age 76, right hemisphere 81.0
2584 Male, age 75, left hemisphere 78.7
2785 Male, age 18, unknown 76.9
Substantia nigra
nTPM: 75.1
2699 Male, age 18, unknown 83.2
2583 Male, age 75, right hemisphere 79.1
2590 Female, age 75, unknown 78.4
1851 Male, age 51, unknown 78.3
2665 Male, age 74, both hemispheres 77.7
1941 Male, age 53, unknown 74.8
2409 Female, age 72, unknown 71.2
2241 Male, age 72, unknown 70.5
1889 Female, age 72, unknown 70.0
1916 Female, age 42, unknown 68.2
Superior colliculus
nTPM: 75.5
1995 Male, age 72, unknown 89.0
1913 Female, age 42, unknown 84.6
2664 Male, age 75, both hemispheres 84.4
1839 Male, age 51, unknown 75.8
2587 Male, age 74, left hemisphere 74.1
2087 Female, age 72, unknown 73.7
1796 Male, age 53, unknown 72.1
1895 Male, age 76, right hemisphere 68.8
2261 Male, age 18, unknown 68.1
2668 Female, age 75, unknown 64.9
Ventral tegmental area
nTPM: 76.1
2223 Female, age 72, unknown 79.7
2410 Female, age 72, unknown 77.2
1942 Male, age 51, unknown 76.7
2021 Male, age 53, unknown 76.3
1915 Female, age 42, unknown 74.4
2218 Male, age 76, both hemispheres 72.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 103.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 103.5
Samples: 139

Max nTPM: 253.1
Min nTPM: 29.9
Std nTPM: 42.2
Median nTPM: 93.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 253.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 213.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 213.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 205.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 199.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 197.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 191.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 189.4
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 185.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 179.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 178.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 146.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 146.4
FF:10158-103A5 76 years, female 146.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.2
Pig sample Sample description nTPM
Midbrain
nTPM: 10.2
Samples: 4

Max nTPM: 16.4
Min nTPM: 6.2
Sample A Female 16.4
Sample B Female 7.9
Sample C Male 10.2
Sample D Male 6.2
Periaqueductal gray
nTPM: 6.8
Samples: 3

Max nTPM: 7.6
Min nTPM: 5.9
Sample B Female 6.8
Sample C Male 7.6
Sample D Male 5.9
Substantia nigra
nTPM: 8.2
Samples: 4

Max nTPM: 9.4
Min nTPM: 7.4
Sample A Female 9.4
Sample B Female 7.7
Sample C Male 8.3
Sample D Male 7.4
Superior colliculi
nTPM: 8.2
Samples: 4

Max nTPM: 9.9
Min nTPM: 6.9
Sample A Female 8.5
Sample B Female 7.5
Sample C Male 9.9
Sample D Male 6.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 25.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.6
Samples: 4

Max nTPM: 27.2
Min nTPM: 24.1
Sample A Male 27.2
Sample B Male 24.1
Sample C Female 24.8
Sample D Female 26.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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