MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:558.1 nTPM
HPA:558.1 nTPM
GTEx:959.8 nTPM
FANTOM5:34.4 Scaled Tags Per Million
Pig:498.8 nTPM
Mouse:491.4 nTPM
Allen mouse:14.9 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 558.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 547.5
2586 Male, age 75, left hemisphere 569.3
2666 Male, age 74, left hemisphere 560.2
2828 Female, age 72, unknown 552.4
1870 Female, age 42, unknown 550.0
2411 Female, age 72, unknown 546.3
1833 Male, age 53, unknown 542.8
1830 Male, age 51, unknown 542.6
1827 Male, age 72, unknown 541.2
2019 Male, age 18, unknown 540.6
2219 Male, age 76, both hemispheres 529.6
Dorsal raphe nucleus
nTPM: 540.2
2298 Female, age 72, unknown 544.0
1828 Male, age 53, unknown 543.4
2016 Female, age 72, unknown 541.9
2750 Male, age 76, both hemispheres 540.8
2047 Male, age 72, unknown 530.9
Inferior colliculus
nTPM: 544.7
1848 Female, age 42, unknown 546.9
2849 Male, age 72, unknown 546.7
1890 Male, age 53, unknown 545.7
2097 Female, age 72, unknown 539.6
Median raphe nucleus
nTPM: 535.4
2220 Male, age 76, midline 535.4
Pedunculopontine tegmental nucleus
nTPM: 547.8
2338 Male, age 61, both hemispheres 574.2
2334 Male, age 80, both hemispheres 546.1
1921 Female, age 85, both hemispheres 523.0
Periaquaductal grey, anterior
nTPM: 546.7
2502 Female, age 75, unknown 557.7
1795 Male, age 51, unknown 541.8
1947 Male, age 18, unknown 540.7
Periaquaductal grey, dorsal
nTPM: 534.0
1840 Male, age 53, unknown 548.5
1831 Male, age 72, unknown 535.1
2464 Female, age 72, unknown 532.6
2850 Male, age 76, both hemispheres 519.5
Periaquaductal grey, lateral
nTPM: 531.8
2053 Male, age 18, unknown 538.3
2272 Male, age 74, both hemispheres 532.2
2140 Male, age 76, both hemispheres 524.9
Pretectal area
nTPM: 536.3
2407 Male, age 75, both hemispheres 548.1
2825 Male, age 18, unknown 544.7
1817 Female, age 42, unknown 543.2
2007 Male, age 72, unknown 539.5
1816 Male, age 51, unknown 537.9
1815 Male, age 53, unknown 536.9
2224 Female, age 72, unknown 534.0
2316 Male, age 76, right hemisphere 531.5
1944 Female, age 72, unknown 529.6
2273 Male, age 74, both hemispheres 528.6
2667 Female, age 75, unknown 525.1
Red nucleus
nTPM: 550.8
2584 Male, age 75, left hemisphere 572.1
2503 Female, age 72, unknown 563.7
1821 Female, age 72, unknown 556.8
2769 Male, age 72, unknown 556.8
1865 Male, age 51, unknown 554.9
2227 Male, age 72, unknown 553.2
1904 Male, age 53, unknown 546.2
2725 Female, age 75, unknown 545.7
1954 Female, age 42, unknown 544.4
2785 Male, age 18, unknown 543.3
2588 Male, age 74, left hemisphere 543.1
2823 Male, age 76, right hemisphere 529.0
Substantia nigra
nTPM: 558.1
2665 Male, age 74, both hemispheres 579.1
1851 Male, age 51, unknown 568.2
2699 Male, age 18, unknown 564.0
2590 Female, age 75, unknown 561.1
2583 Male, age 75, right hemisphere 560.5
2241 Male, age 72, unknown 557.2
2409 Female, age 72, unknown 553.0
1916 Female, age 42, unknown 550.4
1941 Male, age 53, unknown 548.9
1889 Female, age 72, unknown 538.9
Superior colliculus
nTPM: 546.0
2664 Male, age 75, both hemispheres 568.4
2587 Male, age 74, left hemisphere 559.2
2668 Female, age 75, unknown 549.2
1995 Male, age 72, unknown 545.4
1796 Male, age 53, unknown 543.6
2261 Male, age 18, unknown 542.5
1839 Male, age 51, unknown 542.3
1913 Female, age 42, unknown 542.3
2087 Female, age 72, unknown 533.7
1895 Male, age 76, right hemisphere 533.4
Ventral tegmental area
nTPM: 547.9
1915 Female, age 42, unknown 561.5
2223 Female, age 72, unknown 560.9
1942 Male, age 51, unknown 544.3
2021 Male, age 53, unknown 544.2
2410 Female, age 72, unknown 541.5
2218 Male, age 76, both hemispheres 535.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 959.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 959.8
Samples: 139

Max nTPM: 2138.1
Min nTPM: 492.7
Std nTPM: 277.4
Median nTPM: 913.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 2138.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1920.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1901.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1780.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1673.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1582.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1538.3
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1380.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1363.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1359.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1354.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.4
FF:10158-103A5 76 years, female 34.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 498.8
Pig sample Sample description nTPM
Midbrain
nTPM: 454.6
Samples: 4

Max nTPM: 744.7
Min nTPM: 318.7
Sample A Female 744.7
Sample B Female 350.4
Sample C Male 404.7
Sample D Male 318.7
Periaqueductal gray
nTPM: 309.8
Samples: 3

Max nTPM: 347.7
Min nTPM: 281.5
Sample B Female 281.5
Sample C Male 347.7
Sample D Male 300.2
Substantia nigra
nTPM: 440.4
Samples: 4

Max nTPM: 718.0
Min nTPM: 335.9
Sample A Female 718.0
Sample B Female 335.9
Sample C Male 367.6
Sample D Male 339.9
Superior colliculi
nTPM: 498.9
Samples: 4

Max nTPM: 696.3
Min nTPM: 408.5
Sample A Female 696.3
Sample B Female 430.8
Sample C Male 459.8
Sample D Male 408.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 491.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 491.4
Samples: 4

Max nTPM: 533.7
Min nTPM: 456.8
Sample A Male 533.7
Sample B Male 456.8
Sample C Female 466.0
Sample D Female 509.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 14.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.9
69818332 Antisense, RP_050510_04_H05, Mouse strain C57BL/6J (56 days, male) 16.1
81600152 Antisense, RP_080320_03_A06, Mouse strain C57BL/6J (56 days, male) 13.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.