MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:71.1 nTPM
HPA:71.1 nTPM
GTEx:78.2 nTPM
FANTOM5:72.8 Scaled Tags Per Million
Pig:50.6 nTPM
Mouse:89.9 nTPM
Allen mouse:4.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 71.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 71.1
2586 Male, age 75, left hemisphere 78.2
2411 Female, age 72, unknown 74.0
2666 Male, age 74, left hemisphere 72.6
1827 Male, age 72, unknown 71.6
2019 Male, age 18, unknown 70.6
2828 Female, age 72, unknown 70.5
2219 Male, age 76, both hemispheres 70.2
1870 Female, age 42, unknown 69.3
1833 Male, age 53, unknown 67.5
1830 Male, age 51, unknown 66.5
Dorsal raphe nucleus
nTPM: 64.2
2750 Male, age 76, both hemispheres 71.4
1828 Male, age 53, unknown 63.8
2047 Male, age 72, unknown 63.2
2298 Female, age 72, unknown 62.8
2016 Female, age 72, unknown 60.0
Inferior colliculus
nTPM: 61.6
2849 Male, age 72, unknown 64.1
1848 Female, age 42, unknown 62.6
1890 Male, age 53, unknown 60.1
2097 Female, age 72, unknown 59.6
Median raphe nucleus
nTPM: 66.7
2220 Male, age 76, midline 66.7
Pedunculopontine tegmental nucleus
nTPM: 69.2
2334 Male, age 80, both hemispheres 71.9
1921 Female, age 85, both hemispheres 68.6
2338 Male, age 61, both hemispheres 67.2
Periaquaductal grey, anterior
nTPM: 68.1
1795 Male, age 51, unknown 72.4
1947 Male, age 18, unknown 68.3
2502 Female, age 75, unknown 63.4
Periaquaductal grey, dorsal
nTPM: 61.3
2464 Female, age 72, unknown 63.0
1831 Male, age 72, unknown 62.4
1840 Male, age 53, unknown 61.8
2850 Male, age 76, both hemispheres 58.1
Periaquaductal grey, lateral
nTPM: 60.3
2053 Male, age 18, unknown 63.1
2272 Male, age 74, both hemispheres 60.7
2140 Male, age 76, both hemispheres 57.3
Pretectal area
nTPM: 70.8
2007 Male, age 72, unknown 81.6
1816 Male, age 51, unknown 79.1
1817 Female, age 42, unknown 78.6
1944 Female, age 72, unknown 77.8
1815 Male, age 53, unknown 73.6
2407 Male, age 75, both hemispheres 70.5
2667 Female, age 75, unknown 69.4
2825 Male, age 18, unknown 64.5
2224 Female, age 72, unknown 63.5
2316 Male, age 76, right hemisphere 61.8
2273 Male, age 74, both hemispheres 58.4
Red nucleus
nTPM: 67.4
2584 Male, age 75, left hemisphere 77.5
2785 Male, age 18, unknown 76.4
2588 Male, age 74, left hemisphere 74.5
2503 Female, age 72, unknown 68.2
2769 Male, age 72, unknown 66.9
2823 Male, age 76, right hemisphere 66.4
2227 Male, age 72, unknown 65.5
1865 Male, age 51, unknown 64.4
1821 Female, age 72, unknown 63.7
1904 Male, age 53, unknown 63.7
1954 Female, age 42, unknown 63.1
2725 Female, age 75, unknown 58.4
Substantia nigra
nTPM: 64.8
2583 Male, age 75, right hemisphere 76.0
1889 Female, age 72, unknown 71.8
2665 Male, age 74, both hemispheres 69.5
1941 Male, age 53, unknown 68.8
1851 Male, age 51, unknown 64.9
1916 Female, age 42, unknown 62.4
2590 Female, age 75, unknown 60.6
2699 Male, age 18, unknown 59.4
2409 Female, age 72, unknown 58.3
2241 Male, age 72, unknown 55.8
Superior colliculus
nTPM: 70.3
2668 Female, age 75, unknown 97.5
1796 Male, age 53, unknown 72.0
1913 Female, age 42, unknown 71.7
2087 Female, age 72, unknown 70.9
2261 Male, age 18, unknown 68.4
1995 Male, age 72, unknown 68.3
1839 Male, age 51, unknown 65.6
2664 Male, age 75, both hemispheres 63.2
2587 Male, age 74, left hemisphere 63.1
1895 Male, age 76, right hemisphere 62.0
Ventral tegmental area
nTPM: 65.6
2223 Female, age 72, unknown 73.4
2410 Female, age 72, unknown 65.9
2218 Male, age 76, both hemispheres 63.9
1915 Female, age 42, unknown 63.7
1942 Male, age 51, unknown 63.5
2021 Male, age 53, unknown 63.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 78.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 78.2
Samples: 139

Max nTPM: 199.8
Min nTPM: 28.2
Std nTPM: 25.1
Median nTPM: 75.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 199.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 173.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 143.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 141.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 137.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 131.1
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 124.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 121.8
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 116.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 113.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 111.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 72.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 72.8
FF:10158-103A5 76 years, female 72.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 50.6
Pig sample Sample description nTPM
Midbrain
nTPM: 50.6
Samples: 4

Max nTPM: 83.4
Min nTPM: 36.2
Sample A Female 83.4
Sample B Female 45.5
Sample C Male 36.2
Sample D Male 37.2
Periaqueductal gray
nTPM: 36.7
Samples: 3

Max nTPM: 41.1
Min nTPM: 32.8
Sample B Female 36.2
Sample C Male 41.1
Sample D Male 32.8
Substantia nigra
nTPM: 46.5
Samples: 4

Max nTPM: 55.2
Min nTPM: 34.5
Sample A Female 55.2
Sample B Female 34.5
Sample C Male 46.3
Sample D Male 49.9
Superior colliculi
nTPM: 39.9
Samples: 4

Max nTPM: 45.7
Min nTPM: 30.1
Sample A Female 45.7
Sample B Female 30.1
Sample C Male 40.5
Sample D Male 43.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 89.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 89.9
Samples: 4

Max nTPM: 95.5
Min nTPM: 84.3
Sample A Male 95.5
Sample B Male 86.0
Sample C Female 84.3
Sample D Female 93.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.3
69549263 Antisense, RP_050126_01_E06, Mouse strain C57BL/6J (56 days, male) 4.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.