HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:52.8 nTPM
HPA:52.8 nTPM
GTEx:39.3 nTPM
FANTOM5:25.6 Scaled Tags Per Million
Pig:36.7 nTPM
Mouse:33.0 nTPM
Allen mouse:1.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA047924Antibody HPA052962
Glial cells MediumLow
Neuronal cells LowMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 52.8
Sample id Sample description nTPM
Hippocampus
nTPM: 51.5
2529 Female, age 94, left hemisphere 72.8
1898 Male, age 80, left hemisphere 52.8
2148 Female, age 91, left hemisphere 50.6
2621 Female, age 67, right hemisphere 47.7
1911 Female, age 85, right hemisphere 47.0
1855 Male, age 76, left hemisphere 38.0
Dentate gyrus
nTPM: 44.4
2530 Female, age 94, left hemisphere 57.3
2528 Male, age 74, both hemispheres 54.3
2246 Female, age 85, both hemispheres 45.7
2531 Female, age 67, both hemispheres 40.8
1927 Female, age 91, both hemispheres 34.7
2010 Male, age 76, both hemispheres 33.4
Entorhinal gyrus
nTPM: 52.8
2117 Female, age 91, right hemisphere 72.2
2686 Male, age 75, right hemisphere 67.5
2764 Male, age 80, right hemisphere 49.5
1938 Female, age 85, left hemisphere 48.1
1787 Male, age 76, left hemisphere 40.7
2613 Female, age 94, left hemisphere 38.9
Hippocampus, CA1
nTPM: 40.2
2527 Male, age 74, both hemispheres 55.8
1873 Female, age 85, both hemispheres 45.3
2082 Female, age 91, right hemisphere 45.0
2749 Male, age 80, left hemisphere 31.2
2045 Male, age 76, both hemispheres 23.8
Hippocampus, CA2
nTPM: 47.8
1963 Male, age 80, left hemisphere 56.9
2437 Female, age 94, left hemisphere 52.6
2113 Female, age 91, right hemisphere 49.1
1940 Female, age 85, left hemisphere 49.0
2249 Male, age 74, both hemispheres 48.5
1892 Male, age 76, both hemispheres 31.0
Hippocampus, CA3
nTPM: 41.9
2861 Female, age 67, both hemispheres 64.7
1891 Female, age 85, both hemispheres 47.0
2436 Male, age 74, both hemispheres 40.5
1867 Male, age 76, both hemispheres 34.8
2620 Female, age 94, left hemisphere 32.8
2137 Male, age 80, left hemisphere 31.7
Parahippocampal cortex
nTPM: 46.5
2692 Male, age 74, both hemispheres 68.4
2622 Female, age 67, right hemisphere 53.6
1933 Female, age 85, both hemispheres 47.3
2250 Female, age 67, right hemisphere 47.0
2245 Female, age 91, both hemispheres 45.7
1990 Female, age 91, right hemisphere 44.7
2532 Female, age 72, left hemisphere 41.1
2693 Female, age 94, both hemispheres 40.7
1850 Male, age 80, both hemispheres 40.3
2018 Male, age 76, both hemispheres 36.2
Perirhinal gyrus
nTPM: 39.0
2521 Female, age 94, right hemisphere 49.4
1794 Male, age 80, right hemisphere 45.0
1847 Female, age 91, left hemisphere 38.6
1841 Female, age 85, right hemisphere 33.7
2848 Male, age 76, right hemisphere 28.1
Subiculum
nTPM: 50.6
2619 Male, age 74, both hemispheres 62.0
2729 Female, age 91, right hemisphere 57.6
2438 Female, age 94, left hemisphere 48.6
1901 Male, age 80, both hemispheres 46.9
2042 Male, age 76, both hemispheres 45.4
1977 Female, age 85, both hemispheres 43.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 39.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 39.3
Samples: 197

Max nTPM: 79.1
Min nTPM: 16.8
Std nTPM: 12.0
Median nTPM: 38.0
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 79.1
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 78.0
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 75.7
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 70.0
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 65.6
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 65.0
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 63.8
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 62.7
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 62.2
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 61.1
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 60.1
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 25.6
FF:10153-102I9 76 years, female 37.7
FF:10169-103B7 60 years, female 13.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 36.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 28.6
Samples: 4

Max nTPM: 37.2
Min nTPM: 19.2
Sample A Female 37.2
Sample B Female 28.9
Sample C Male 29.2
Sample D Male 19.2
Entorhinal cortex
nTPM: 29.9
Samples: 4

Max nTPM: 33.8
Min nTPM: 23.0
Sample A Female 29.8
Sample B Female 33.0
Sample C Male 33.8
Sample D Male 23.0
Subiculum
nTPM: 33.7
Samples: 4

Max nTPM: 43.2
Min nTPM: 26.5
Sample A Female 43.2
Sample B Female 33.3
Sample C Male 31.8
Sample D Male 26.5
Ventral hippocampus
nTPM: 36.7
Samples: 4

Max nTPM: 47.4
Min nTPM: 28.9
Sample A Female 38.2
Sample B Female 32.2
Sample C Male 47.4
Sample D Male 28.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 33.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 33.0
Samples: 4

Max nTPM: 35.0
Min nTPM: 30.1
Sample A Male 35.0
Sample B Male 31.9
Sample C Female 30.1
Sample D Female 35.0
Hippocampal formation
nTPM: 29.4
Samples: 4

Max nTPM: 30.5
Min nTPM: 27.5
Sample A Male 30.2
Sample B Male 30.5
Sample C Female 27.5
Sample D Female 29.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.2
671260 Antisense, RP_040914_02_C11, Mouse strain C57BL/6J (56 days, male) 1.8
70743871 Antisense, RP_050725_01_G11, Mouse strain C57BL/6J (56 days, male) 1.1
77910763 Antisense, RP_070208_04_G01, Mouse strain C57BL/6J (56 days, male) 0.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.