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FAM171A1
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  • FAM171A1
TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:59.3 nTPM
HPA:59.3 nTPM
GTEx:107.4 nTPM
FANTOM5:53.0 Scaled Tags Per Million
Pig:42.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 59.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 55.6
1981 Female, age 72, midline 57.9
2816 Male, age 47, midline 57.9
2565 Male, age 75, midline 55.1
2048 Male, age 55, midline 54.7
2194 Female, age 79, both hemispheres 52.7
Cervical spinal cord, dorsal horn
nTPM: 58.4
2296 Male, age 66, both hemispheres 91.8
2173 Female, age 72, unknown 71.0
1877 Male, age 55, unknown 55.0
2069 Male, age 47, both hemispheres 53.6
2297 Male, age 75, both hemispheres 41.1
2721 Male, age 90, both hemispheres 37.6
Cervical spinal cord, ventral horn
nTPM: 59.3
2480 Male, age 75, both hemispheres 65.5
2098 Female, age 72, unknown 60.0
2068 Male, age 55, unknown 58.9
2820 Female, age 79, both hemispheres 58.9
2295 Male, age 66, both hemispheres 57.3
2809 Male, age 90, both hemispheres 55.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 107.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 107.4
Samples: 159

Max nTPM: 225.7
Min nTPM: 39.5
Std nTPM: 40.2
Median nTPM: 104.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 225.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 215.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 213.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 202.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 198.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 196.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 184.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 183.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 179.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 179.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 178.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 176.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 176.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 175.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 170.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 169.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 164.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 163.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 162.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 160.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 154.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 154.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 149.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 148.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 145.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 143.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 143.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 143.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 142.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 139.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 138.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 138.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 137.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 137.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 136.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 136.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 136.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 134.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 133.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 131.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 131.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 131.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 130.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 128.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 127.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 126.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 124.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 123.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 120.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 120.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 120.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 119.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 117.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 117.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 116.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 115.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 115.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 115.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 115.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 114.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 114.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 114.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 114.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 113.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 112.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 112.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 111.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 111.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 109.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 109.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 107.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 107.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 106.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 106.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 106.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 106.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 105.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 105.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 104.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 104.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 103.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 102.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 102.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 101.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 99.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 97.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 96.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 96.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 96.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 96.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 95.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 95.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 95.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 94.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 94.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 94.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 93.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 90.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 89.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 88.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 87.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 86.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 85.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 85.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 85.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 84.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 83.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 83.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 83.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 83.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 82.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 82.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 82.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 81.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 80.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 80.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 79.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 78.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 78.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 77.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 76.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 76.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 74.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 74.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 74.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 73.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 73.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 73.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 71.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 71.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 71.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 70.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 70.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 68.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 67.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 66.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 66.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 64.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 64.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 63.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 63.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 61.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 61.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 59.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 58.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 57.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 54.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 49.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 49.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 48.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 48.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 47.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 45.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 44.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 44.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 44.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 43.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 42.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 39.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 53.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 53.0
FF:10181-103D1 60 years, female 68.7
FF:10159-103A6 76 years, female 37.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 42.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 29.3
Samples: 4

Max nTPM: 31.3
Min nTPM: 26.2
Sample A Female 30.1
Sample B Female 26.2
Sample C Male 31.3
Sample D Male 29.5
Ventral spinal cord
nTPM: 42.4
Samples: 4

Max nTPM: 53.0
Min nTPM: 32.4
Sample A Female 53.0
Sample B Female 40.4
Sample C Male 43.9
Sample D Male 32.4

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