HIPPOCAMPAL FORMATION - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:36.5 nTPM
HPA:36.5 nTPM
GTEx:13.7 nTPM
FANTOM5:61.6 Scaled Tags Per Million
Pig:15.9 nTPM
Mouse:68.4 nTPM
Allen mouse:0.0 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 36.5
Sample id Sample description nTPM
Hippocampus
nTPM: 27.1
2529 Female, age 94, left hemisphere 28.5
1911 Female, age 85, right hemisphere 27.9
2148 Female, age 91, left hemisphere 27.9
1855 Male, age 76, left hemisphere 27.3
1898 Male, age 80, left hemisphere 27.2
2621 Female, age 67, right hemisphere 24.0
Dentate gyrus
nTPM: 25.1
2528 Male, age 74, both hemispheres 28.4
2246 Female, age 85, both hemispheres 27.9
1927 Female, age 91, both hemispheres 25.5
2010 Male, age 76, both hemispheres 25.3
2531 Female, age 67, both hemispheres 22.2
2530 Female, age 94, left hemisphere 21.5
Entorhinal gyrus
nTPM: 25.2
2117 Female, age 91, right hemisphere 32.2
1938 Female, age 85, left hemisphere 29.3
1787 Male, age 76, left hemisphere 24.7
2764 Male, age 80, right hemisphere 22.4
2686 Male, age 75, right hemisphere 22.0
2613 Female, age 94, left hemisphere 20.8
Hippocampus, CA1
nTPM: 26.1
2527 Male, age 74, both hemispheres 31.9
1873 Female, age 85, both hemispheres 28.1
2082 Female, age 91, right hemisphere 27.3
2045 Male, age 76, both hemispheres 22.8
2749 Male, age 80, left hemisphere 20.5
Hippocampus, CA2
nTPM: 28.4
2249 Male, age 74, both hemispheres 50.6
2113 Female, age 91, right hemisphere 27.5
1940 Female, age 85, left hemisphere 24.7
2437 Female, age 94, left hemisphere 23.2
1963 Male, age 80, left hemisphere 22.3
1892 Male, age 76, both hemispheres 22.1
Hippocampus, CA3
nTPM: 36.5
2436 Male, age 74, both hemispheres 97.7
1891 Female, age 85, both hemispheres 28.6
2620 Female, age 94, left hemisphere 23.7
2861 Female, age 67, both hemispheres 23.5
1867 Male, age 76, both hemispheres 23.2
2137 Male, age 80, left hemisphere 22.5
Parahippocampal cortex
nTPM: 25.8
1933 Female, age 85, both hemispheres 30.1
2692 Male, age 74, both hemispheres 28.7
2250 Female, age 67, right hemisphere 27.4
1990 Female, age 91, right hemisphere 26.7
1850 Male, age 80, both hemispheres 25.3
2245 Female, age 91, both hemispheres 25.2
2018 Male, age 76, both hemispheres 24.9
2693 Female, age 94, both hemispheres 24.0
2622 Female, age 67, right hemisphere 23.7
2532 Female, age 72, left hemisphere 21.7
Perirhinal gyrus
nTPM: 26.0
1847 Female, age 91, left hemisphere 28.3
1841 Female, age 85, right hemisphere 27.3
1794 Male, age 80, right hemisphere 26.5
2521 Female, age 94, right hemisphere 25.7
2848 Male, age 76, right hemisphere 22.4
Subiculum
nTPM: 26.8
2729 Female, age 91, right hemisphere 32.1
2619 Male, age 74, both hemispheres 31.8
2438 Female, age 94, left hemisphere 25.3
1977 Female, age 85, both hemispheres 25.0
1901 Male, age 80, both hemispheres 23.6
2042 Male, age 76, both hemispheres 22.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 13.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 13.7
Samples: 197

Max nTPM: 52.2
Min nTPM: 0.9
Std nTPM: 8.3
Median nTPM: 12.3
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 52.2
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 50.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 49.2
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 37.2
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 35.4
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 32.5
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 32.2
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 29.9
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 29.8
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 28.8
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 28.3
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 61.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 61.6
FF:10153-102I9 76 years, female 100.3
FF:10169-103B7 60 years, female 23.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 15.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 13.1
Samples: 4

Max nTPM: 15.0
Min nTPM: 11.1
Sample A Female 14.5
Sample B Female 11.1
Sample C Male 15.0
Sample D Male 11.9
Entorhinal cortex
nTPM: 14.5
Samples: 4

Max nTPM: 15.8
Min nTPM: 13.3
Sample A Female 14.4
Sample B Female 15.8
Sample C Male 14.3
Sample D Male 13.3
Subiculum
nTPM: 16.0
Samples: 4

Max nTPM: 20.9
Min nTPM: 12.4
Sample A Female 20.9
Sample B Female 15.5
Sample C Male 15.0
Sample D Male 12.4
Ventral hippocampus
nTPM: 15.3
Samples: 4

Max nTPM: 19.5
Min nTPM: 11.8
Sample A Female 15.7
Sample B Female 14.0
Sample C Male 19.5
Sample D Male 11.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 68.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 68.4
Samples: 4

Max nTPM: 73.7
Min nTPM: 63.0
Sample A Male 71.6
Sample B Male 65.3
Sample C Female 73.7
Sample D Female 63.0
Hippocampal formation
nTPM: 66.6
Samples: 4

Max nTPM: 81.0
Min nTPM: 57.0
Sample A Male 70.1
Sample B Male 57.0
Sample C Female 58.4
Sample D Female 81.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.0
70302168 Antisense, RP_050607_03_G01, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.