MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:96.5 nTPM
HPA:96.5 nTPM
GTEx:65.8 nTPM
FANTOM5:51.5 Scaled Tags Per Million
Pig:66.9 nTPM
Mouse:188.9 nTPM
Allen mouse:14.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 96.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 84.0
2586 Male, age 75, left hemisphere 107.4
2019 Male, age 18, unknown 100.9
2828 Female, age 72, unknown 89.5
1827 Male, age 72, unknown 83.0
1870 Female, age 42, unknown 81.4
2411 Female, age 72, unknown 77.2
2666 Male, age 74, left hemisphere 77.2
1833 Male, age 53, unknown 76.8
1830 Male, age 51, unknown 74.2
2219 Male, age 76, both hemispheres 72.2
Dorsal raphe nucleus
nTPM: 82.2
2047 Male, age 72, unknown 90.8
2016 Female, age 72, unknown 87.9
1828 Male, age 53, unknown 87.0
2298 Female, age 72, unknown 84.3
2750 Male, age 76, both hemispheres 60.8
Inferior colliculus
nTPM: 96.5
1848 Female, age 42, unknown 108.7
2849 Male, age 72, unknown 101.2
2097 Female, age 72, unknown 89.4
1890 Male, age 53, unknown 86.9
Median raphe nucleus
nTPM: 64.2
2220 Male, age 76, midline 64.2
Pedunculopontine tegmental nucleus
nTPM: 69.5
1921 Female, age 85, both hemispheres 77.0
2334 Male, age 80, both hemispheres 74.1
2338 Male, age 61, both hemispheres 57.4
Periaquaductal grey, anterior
nTPM: 78.1
2502 Female, age 75, unknown 82.7
1795 Male, age 51, unknown 79.5
1947 Male, age 18, unknown 72.1
Periaquaductal grey, dorsal
nTPM: 78.8
1840 Male, age 53, unknown 96.6
2464 Female, age 72, unknown 87.4
1831 Male, age 72, unknown 67.8
2850 Male, age 76, both hemispheres 63.5
Periaquaductal grey, lateral
nTPM: 74.1
2053 Male, age 18, unknown 79.2
2272 Male, age 74, both hemispheres 74.0
2140 Male, age 76, both hemispheres 69.3
Pretectal area
nTPM: 86.2
2667 Female, age 75, unknown 99.9
1817 Female, age 42, unknown 96.2
2007 Male, age 72, unknown 94.8
1944 Female, age 72, unknown 91.7
2273 Male, age 74, both hemispheres 90.1
1816 Male, age 51, unknown 87.1
2407 Male, age 75, both hemispheres 85.5
2224 Female, age 72, unknown 80.0
2825 Male, age 18, unknown 78.5
1815 Male, age 53, unknown 76.7
2316 Male, age 76, right hemisphere 67.4
Red nucleus
nTPM: 80.8
1821 Female, age 72, unknown 90.4
1954 Female, age 42, unknown 88.2
2785 Male, age 18, unknown 87.4
2503 Female, age 72, unknown 86.1
2769 Male, age 72, unknown 86.1
2227 Male, age 72, unknown 85.5
2588 Male, age 74, left hemisphere 81.3
2584 Male, age 75, left hemisphere 75.3
1865 Male, age 51, unknown 75.0
2725 Female, age 75, unknown 73.1
1904 Male, age 53, unknown 71.3
2823 Male, age 76, right hemisphere 69.3
Substantia nigra
nTPM: 81.8
1941 Male, age 53, unknown 96.3
2583 Male, age 75, right hemisphere 90.6
1916 Female, age 42, unknown 88.1
1889 Female, age 72, unknown 86.5
2665 Male, age 74, both hemispheres 82.4
1851 Male, age 51, unknown 78.6
2241 Male, age 72, unknown 78.5
2699 Male, age 18, unknown 74.8
2409 Female, age 72, unknown 72.5
2590 Female, age 75, unknown 69.6
Superior colliculus
nTPM: 83.1
2664 Male, age 75, both hemispheres 115.4
1895 Male, age 76, right hemisphere 90.1
1839 Male, age 51, unknown 89.8
2668 Female, age 75, unknown 85.7
2087 Female, age 72, unknown 83.4
1796 Male, age 53, unknown 82.5
2587 Male, age 74, left hemisphere 80.0
2261 Male, age 18, unknown 74.5
1995 Male, age 72, unknown 65.9
1913 Female, age 42, unknown 63.2
Ventral tegmental area
nTPM: 74.0
2410 Female, age 72, unknown 87.6
1915 Female, age 42, unknown 79.9
1942 Male, age 51, unknown 79.0
2021 Male, age 53, unknown 68.5
2223 Female, age 72, unknown 65.5
2218 Male, age 76, both hemispheres 63.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 65.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 65.8
Samples: 139

Max nTPM: 156.9
Min nTPM: 10.2
Std nTPM: 27.9
Median nTPM: 63.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 156.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 150.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 144.4
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 132.3
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 128.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 125.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 120.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 118.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 118.3
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 112.9
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 110.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 51.5
FF:10158-103A5 76 years, female 51.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 66.9
Pig sample Sample description nTPM
Midbrain
nTPM: 65.7
Samples: 4

Max nTPM: 84.5
Min nTPM: 52.0
Sample A Female 84.5
Sample B Female 52.0
Sample C Male 57.5
Sample D Male 68.6
Periaqueductal gray
nTPM: 51.2
Samples: 3

Max nTPM: 57.5
Min nTPM: 45.9
Sample B Female 50.1
Sample C Male 57.5
Sample D Male 45.9
Substantia nigra
nTPM: 60.3
Samples: 4

Max nTPM: 76.8
Min nTPM: 51.1
Sample A Female 76.8
Sample B Female 51.1
Sample C Male 58.8
Sample D Male 54.6
Superior colliculi
nTPM: 66.9
Samples: 4

Max nTPM: 86.0
Min nTPM: 34.2
Sample A Female 86.0
Sample B Female 34.2
Sample C Male 77.2
Sample D Male 70.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 188.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 188.9
Samples: 4

Max nTPM: 197.1
Min nTPM: 184.7
Sample A Male 197.1
Sample B Male 188.6
Sample C Female 185.3
Sample D Female 184.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 14.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.0
190 Antisense, RP_Baylor_253885, Mouse strain C57BL/6J (56 days, male) 14.0
189 Antisense, RP_Baylor_253885, Mouse strain C57BL/6J (56 days, male) 12.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.