MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:237.0 nTPM
HPA:237.0 nTPM
GTEx:39.3 nTPM
FANTOM5:164.7 Scaled Tags Per Million
Pig:108.0 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 237.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 219.4
2828 Female, age 72, unknown 229.7
1870 Female, age 42, unknown 225.2
2666 Male, age 74, left hemisphere 224.3
1827 Male, age 72, unknown 221.5
2411 Female, age 72, unknown 217.9
1833 Male, age 53, unknown 217.8
2586 Male, age 75, left hemisphere 215.7
2019 Male, age 18, unknown 214.6
1830 Male, age 51, unknown 213.9
2219 Male, age 76, both hemispheres 212.8
Dorsal raphe nucleus
nTPM: 227.5
2298 Female, age 72, unknown 238.0
2016 Female, age 72, unknown 235.8
1828 Male, age 53, unknown 223.2
2047 Male, age 72, unknown 220.7
2750 Male, age 76, both hemispheres 219.6
Inferior colliculus
nTPM: 220.6
1890 Male, age 53, unknown 227.0
2097 Female, age 72, unknown 224.3
1848 Female, age 42, unknown 216.1
2849 Male, age 72, unknown 214.9
Median raphe nucleus
nTPM: 224.5
2220 Male, age 76, midline 224.5
Pedunculopontine tegmental nucleus
nTPM: 225.8
2338 Male, age 61, both hemispheres 236.8
2334 Male, age 80, both hemispheres 226.5
1921 Female, age 85, both hemispheres 214.1
Periaquaductal grey, anterior
nTPM: 230.2
1795 Male, age 51, unknown 239.8
1947 Male, age 18, unknown 229.5
2502 Female, age 75, unknown 221.2
Periaquaductal grey, dorsal
nTPM: 229.7
1831 Male, age 72, unknown 236.5
2850 Male, age 76, both hemispheres 235.9
1840 Male, age 53, unknown 223.6
2464 Female, age 72, unknown 222.8
Periaquaductal grey, lateral
nTPM: 237.0
2140 Male, age 76, both hemispheres 240.4
2053 Male, age 18, unknown 240.0
2272 Male, age 74, both hemispheres 230.6
Pretectal area
nTPM: 223.6
2224 Female, age 72, unknown 231.8
2273 Male, age 74, both hemispheres 231.6
2667 Female, age 75, unknown 231.0
2825 Male, age 18, unknown 224.9
1817 Female, age 42, unknown 222.6
1944 Female, age 72, unknown 222.6
2316 Male, age 76, right hemisphere 221.8
1816 Male, age 51, unknown 220.7
1815 Male, age 53, unknown 219.7
2407 Male, age 75, both hemispheres 218.8
2007 Male, age 72, unknown 214.5
Red nucleus
nTPM: 221.0
2588 Male, age 74, left hemisphere 228.3
1954 Female, age 42, unknown 225.8
2725 Female, age 75, unknown 223.8
2503 Female, age 72, unknown 223.3
2769 Male, age 72, unknown 223.1
2227 Male, age 72, unknown 222.4
1821 Female, age 72, unknown 221.3
1904 Male, age 53, unknown 219.6
1865 Male, age 51, unknown 218.0
2584 Male, age 75, left hemisphere 216.0
2823 Male, age 76, right hemisphere 215.4
2785 Male, age 18, unknown 214.8
Substantia nigra
nTPM: 223.1
1851 Male, age 51, unknown 235.9
2699 Male, age 18, unknown 232.7
2665 Male, age 74, both hemispheres 229.7
1916 Female, age 42, unknown 222.4
2590 Female, age 75, unknown 221.7
1941 Male, age 53, unknown 221.6
2583 Male, age 75, right hemisphere 220.3
1889 Female, age 72, unknown 217.1
2409 Female, age 72, unknown 214.7
2241 Male, age 72, unknown 214.6
Superior colliculus
nTPM: 225.7
1995 Male, age 72, unknown 252.6
1913 Female, age 42, unknown 238.9
2087 Female, age 72, unknown 227.2
2587 Male, age 74, left hemisphere 226.4
2261 Male, age 18, unknown 223.4
1796 Male, age 53, unknown 223.3
2668 Female, age 75, unknown 221.2
1839 Male, age 51, unknown 217.7
2664 Male, age 75, both hemispheres 215.1
1895 Male, age 76, right hemisphere 210.7
Ventral tegmental area
nTPM: 228.7
2021 Male, age 53, unknown 238.9
1915 Female, age 42, unknown 233.3
1942 Male, age 51, unknown 228.1
2223 Female, age 72, unknown 225.7
2218 Male, age 76, both hemispheres 224.1
2410 Female, age 72, unknown 222.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 39.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.3
Samples: 139

Max nTPM: 157.9
Min nTPM: 9.2
Std nTPM: 22.1
Median nTPM: 34.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 157.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 122.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 122.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 94.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 92.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 86.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 74.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 68.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 67.7
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 67.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 66.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 164.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 164.7
FF:10158-103A5 76 years, female 164.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 108.0
Pig sample Sample description nTPM
Midbrain
nTPM: 54.4
Samples: 4

Max nTPM: 109.7
Min nTPM: 20.8
Sample A Female 28.2
Sample B Female 20.8
Sample C Male 109.7
Sample D Male 58.9
Periaqueductal gray
nTPM: 108.0
Samples: 3

Max nTPM: 175.7
Min nTPM: 24.9
Sample B Female 24.9
Sample C Male 175.7
Sample D Male 123.5
Substantia nigra
nTPM: 83.1
Samples: 4

Max nTPM: 158.9
Min nTPM: 29.5
Sample A Female 29.5
Sample B Female 32.4
Sample C Male 158.9
Sample D Male 111.5
Superior colliculi
nTPM: 65.2
Samples: 4

Max nTPM: 121.6
Min nTPM: 16.1
Sample A Female 16.5
Sample B Female 16.1
Sample C Male 121.6
Sample D Male 106.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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