MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:127.1 nTPM
HPA:127.1 nTPM
GTEx:107.3 nTPM
FANTOM5:51.0 Scaled Tags Per Million
Pig:19.6 nTPM
Mouse:37.4 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 127.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 116.7
2411 Female, age 72, unknown 127.2
1827 Male, age 72, unknown 122.8
1870 Female, age 42, unknown 119.1
2019 Male, age 18, unknown 116.4
1833 Male, age 53, unknown 115.1
1830 Male, age 51, unknown 114.6
2828 Female, age 72, unknown 114.6
2666 Male, age 74, left hemisphere 114.4
2219 Male, age 76, both hemispheres 111.9
2586 Male, age 75, left hemisphere 110.9
Dorsal raphe nucleus
nTPM: 118.6
2298 Female, age 72, unknown 124.7
2750 Male, age 76, both hemispheres 121.1
1828 Male, age 53, unknown 118.3
2047 Male, age 72, unknown 117.6
2016 Female, age 72, unknown 111.4
Inferior colliculus
nTPM: 116.3
2097 Female, age 72, unknown 121.6
1890 Male, age 53, unknown 117.8
1848 Female, age 42, unknown 115.2
2849 Male, age 72, unknown 110.8
Median raphe nucleus
nTPM: 118.3
2220 Male, age 76, midline 118.3
Pedunculopontine tegmental nucleus
nTPM: 118.5
2334 Male, age 80, both hemispheres 120.4
1921 Female, age 85, both hemispheres 118.8
2338 Male, age 61, both hemispheres 116.3
Periaquaductal grey, anterior
nTPM: 127.1
1947 Male, age 18, unknown 142.7
2502 Female, age 75, unknown 119.6
1795 Male, age 51, unknown 119.0
Periaquaductal grey, dorsal
nTPM: 111.5
2464 Female, age 72, unknown 113.1
1840 Male, age 53, unknown 112.4
2850 Male, age 76, both hemispheres 110.6
1831 Male, age 72, unknown 110.0
Periaquaductal grey, lateral
nTPM: 113.4
2272 Male, age 74, both hemispheres 117.2
2053 Male, age 18, unknown 111.9
2140 Male, age 76, both hemispheres 111.0
Pretectal area
nTPM: 117.6
1816 Male, age 51, unknown 122.9
1944 Female, age 72, unknown 120.0
2007 Male, age 72, unknown 119.3
1817 Female, age 42, unknown 119.0
2667 Female, age 75, unknown 118.8
1815 Male, age 53, unknown 118.4
2273 Male, age 74, both hemispheres 117.4
2224 Female, age 72, unknown 117.0
2316 Male, age 76, right hemisphere 115.8
2825 Male, age 18, unknown 114.8
2407 Male, age 75, both hemispheres 110.0
Red nucleus
nTPM: 117.5
1821 Female, age 72, unknown 125.2
1865 Male, age 51, unknown 119.7
1904 Male, age 53, unknown 119.3
2725 Female, age 75, unknown 119.1
2503 Female, age 72, unknown 118.7
1954 Female, age 42, unknown 118.5
2823 Male, age 76, right hemisphere 117.7
2227 Male, age 72, unknown 116.2
2588 Male, age 74, left hemisphere 115.1
2769 Male, age 72, unknown 114.8
2785 Male, age 18, unknown 113.1
2584 Male, age 75, left hemisphere 112.3
Substantia nigra
nTPM: 120.2
2241 Male, age 72, unknown 128.0
1916 Female, age 42, unknown 125.7
1851 Male, age 51, unknown 125.2
2590 Female, age 75, unknown 122.3
2409 Female, age 72, unknown 121.9
1889 Female, age 72, unknown 121.0
1941 Male, age 53, unknown 116.1
2583 Male, age 75, right hemisphere 114.8
2665 Male, age 74, both hemispheres 114.8
2699 Male, age 18, unknown 112.5
Superior colliculus
nTPM: 116.1
2261 Male, age 18, unknown 121.5
1796 Male, age 53, unknown 121.1
1895 Male, age 76, right hemisphere 118.8
2087 Female, age 72, unknown 118.6
1913 Female, age 42, unknown 116.9
2668 Female, age 75, unknown 115.6
2587 Male, age 74, left hemisphere 114.0
1995 Male, age 72, unknown 113.7
1839 Male, age 51, unknown 112.8
2664 Male, age 75, both hemispheres 107.7
Ventral tegmental area
nTPM: 118.5
2410 Female, age 72, unknown 124.8
1915 Female, age 42, unknown 123.6
1942 Male, age 51, unknown 117.2
2218 Male, age 76, both hemispheres 116.6
2223 Female, age 72, unknown 116.2
2021 Male, age 53, unknown 112.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 107.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 107.3
Samples: 139

Max nTPM: 221.8
Min nTPM: 61.1
Std nTPM: 25.8
Median nTPM: 102.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 221.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 198.3
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 191.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 187.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 174.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 154.2
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 153.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 151.2
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 149.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 144.5
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 143.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 51.0
FF:10158-103A5 76 years, female 51.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 19.6
Pig sample Sample description nTPM
Midbrain
nTPM: 0.6
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.4
Sample A Female 0.7
Sample B Female 0.5
Sample C Male 0.4
Sample D Male 0.7
Periaqueductal gray
nTPM: 0.8
Samples: 3

Max nTPM: 1.0
Min nTPM: 0.3
Sample B Female 0.3
Sample C Male 1.0
Sample D Male 1.0
Substantia nigra
nTPM: 1.0
Samples: 4

Max nTPM: 1.3
Min nTPM: 0.6
Sample A Female 1.1
Sample B Female 1.0
Sample C Male 1.3
Sample D Male 0.6
Superior colliculi
nTPM: 0.4
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.2
Sample A Female 0.3
Sample B Female 0.7
Sample C Male 0.3
Sample D Male 0.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 37.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 37.4
Samples: 4

Max nTPM: 42.6
Min nTPM: 34.5
Sample A Male 34.5
Sample B Male 36.2
Sample C Female 36.3
Sample D Female 42.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
74511807 Antisense, RP_060220_03_B04, Mouse strain C57BL/6J (56 days, male) 0.7
71232779 Antisense, RP_050503_01_C10, Mouse strain C57BL/6J (56 days, male) 0.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.