BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:46.7 nTPM
HPA:46.7 nTPM
GTEx:36.2 nTPM
FANTOM5:64.8 Scaled Tags Per Million
Pig:3.4 nTPM
Mouse:40.9 nTPM
Allen mouse:0.7 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA035063Antibody HPA035064
Glial cells Not detectedNot detected
Neuronal cells MediumMedium





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 46.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 46.4
2481 Female, age 94, left hemisphere 50.4
2288 Male, age 75, left hemisphere 47.4
2846 Female, age 79, unknown 47.2
1854 Male, age 80, left hemisphere 45.6
1857 Female, age 85, left hemisphere 45.5
2290 Female, age 72, unknown 45.4
2289 Male, age 61, right hemisphere 45.2
1781 Male, age 74, unknown 44.7
Claustrum
nTPM: 44.8
1956 Male, age 74, unknown 46.4
2198 Male, age 80, both hemispheres 46.3
2196 Female, age 79, unknown 45.8
2392 Female, age 94, both hemispheres 45.7
2491 Male, age 75, both hemispheres 45.1
2284 Female, age 91, both hemispheres 43.9
2568 Male, age 61, both hemispheres 43.5
2292 Female, age 85, both hemispheres 43.3
2645 Female, age 72, unknown 42.7
Globus pallidus, externus
nTPM: 44.9
2772 Female, age 79, unknown 48.8
1996 Male, age 80, right hemisphere 46.3
2395 Male, age 75, both hemispheres 46.3
2646 Male, age 61, right hemisphere 41.9
2567 Female, age 72, unknown 41.4
Globus pallidus, internus
nTPM: 46.7
2287 Male, age 75, right hemisphere 49.2
2778 Female, age 91, both hemispheres 49.2
2483 Female, age 94, right hemisphere 48.1
1818 Male, age 74, unknown 46.2
2037 Male, age 80, right hemisphere 45.8
2111 Female, age 85, right hemisphere 45.6
2566 Female, age 72, unknown 42.9
Nucleus accumbens
nTPM: 46.4
2286 Male, age 75, left hemisphere 48.9
2391 Female, age 94, left hemisphere 48.7
1783 Male, age 74, unknown 46.8
2698 Female, age 72, unknown 46.6
1806 Female, age 85, left hemisphere 46.1
1856 Female, age 91, right hemisphere 45.6
2732 Male, age 80, right hemisphere 45.2
2824 Male, age 61, right hemisphere 43.4
Nucleus basalis of Meynert
nTPM: 44.4
2484 Female, age 94, left hemisphere 46.6
2393 Male, age 80, right hemisphere 44.8
2821 Male, age 75, both hemispheres 44.5
2569 Male, age 61, both hemispheres 41.8
Nucleus of the diagonal band
nTPM: 45.6
1812 Female, age 91, both hemispheres 47.8
2775 Male, age 80, right hemisphere 46.5
2195 Female, age 85, both hemispheres 44.9
2029 Male, age 61, right hemisphere 44.6
1979 Male, age 74, unknown 44.0
Olfactory tubercle
nTPM: 45.2
1846 Male, age 80, right hemisphere 46.9
1998 Female, age 91, both hemispheres 45.4
2856 Male, age 75, right hemisphere 44.8
2487 Female, age 94, left hemisphere 43.9
Putamen
nTPM: 45.5
2482 Female, age 94, left hemisphere 47.9
2466 Female, age 79, unknown 46.8
1937 Female, age 91, right hemisphere 46.7
1838 Male, age 80, right hemisphere 45.7
1829 Male, age 74, unknown 45.4
2647 Male, age 75, left hemisphere 43.0
2489 Female, age 72, unknown 42.9
Septal nuclei
nTPM: 45.4
2031 Female, age 72, unknown 47.4
1960 Male, age 74, unknown 47.1
2009 Female, age 91, both hemispheres 45.7
2629 Female, age 94, right hemisphere 45.1
2059 Female, age 85, both hemispheres 44.7
2199 Male, age 80, right hemisphere 44.5
2394 Male, age 61, left hemisphere 43.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 36.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 34.7
Samples: 246

Max nTPM: 77.5
Min nTPM: 19.7
Std nTPM: 8.8
Median nTPM: 33.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 77.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 72.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 70.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 62.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 61.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 58.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 56.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 55.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 55.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 54.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 53.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 35.6
Samples: 246

Max nTPM: 69.7
Min nTPM: 19.5
Std nTPM: 8.2
Median nTPM: 34.5
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 69.7
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 69.1
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 68.5
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 62.9
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 59.2
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 59.2
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 57.8
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 54.4
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 52.0
GTEX-1MA7X-0011-R6a-SM-EYYWR 60-69 years, male 51.8
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 51.5
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Brain - Putamen (basal ganglia)
Average nTPM: 36.2
Samples: 205

Max nTPM: 67.1
Min nTPM: 22.3
Std nTPM: 8.3
Median nTPM: 34.0
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 67.1
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 64.0
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 59.5
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 58.5
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 57.9
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 54.5
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 54.2
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 54.0
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 53.3
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 53.1
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 53.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 64.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 55.2
FF:10164-103B2 76 years, female 55.2
Globus pallidus
Scaled Tags Per Million: 64.8
FF:10175-103C4 60 years, female 74.2
FF:10161-103A8 76 years, female 55.4
Nucleus accumbens
Scaled Tags Per Million: 50.8
FF:10037-101F1 23-56 years, mixed 50.8
Putamen
Scaled Tags Per Million: 48.3
FF:10176-103C5 60 years, female 48.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 3.4
Pig sample Sample description nTPM
Caudate
nTPM: 3.4
Samples: 4

Max nTPM: 3.8
Min nTPM: 3.2
Sample A Female 3.2
Sample B Female 3.8
Sample C Male 3.4
Sample D Male 3.2
Putamen
nTPM: 3.1
Samples: 4

Max nTPM: 4.1
Min nTPM: 2.5
Sample A Female 2.8
Sample B Female 2.5
Sample C Male 4.1
Sample D Male 3.0
Septum
nTPM: 3.1
Samples: 4

Max nTPM: 3.8
Min nTPM: 2.5
Sample A Female 3.0
Sample B Female 2.5
Sample C Male 3.0
Sample D Male 3.8
Ventral pallidum
nTPM: 2.8
Samples: 4

Max nTPM: 3.3
Min nTPM: 2.4
Sample A Female 2.4
Sample B Female 3.2
Sample C Male 2.4
Sample D Male 3.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 40.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 39.5
Samples: 4

Max nTPM: 45.4
Min nTPM: 35.6
Sample A Male 35.6
Sample B Male 36.9
Sample C Female 40.2
Sample D Female 45.4
Septum
nTPM: 36.3
Samples: 4

Max nTPM: 43.1
Min nTPM: 28.3
Sample A Male 28.3
Sample B Male 43.1
Sample C Female 34.3
Sample D Female 39.5
Ventral forebrain
nTPM: 40.9
Samples: 4

Max nTPM: 46.5
Min nTPM: 35.4
Sample A Male 35.4
Sample B Male 37.4
Sample C Female 46.5
Sample D Female 44.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.7
75198082 Antisense, RP_060502_01_F08, Mouse strain C57BL/6J (56 days, male) 0.7
Pallidum
Expression energy: 0.7
75198082 Antisense, RP_060502_01_F08, Mouse strain C57BL/6J (56 days, male) 0.7

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